JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PWP2_chr21_44102399_44136181	0/0	t0006	429	1	0	0	1	0	0	copy fasta	PWP2	chr21	44102399	44136181
PWWP2A_chr5_160086339_160124450	1/0	t0001	1106	111	18	23	51	6	12	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0002	1124	42	7	7	23	1	4	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0003	1126	36	6	6	15	2	7	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0004	1128	25	8	3	11	0	3	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0005	1117	25	1	3	20	0	1	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0006	1130	21	7	4	6	3	1	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0007	1108	16	0	0	16	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0008	1122	12	4	3	2	0	3	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/1	t0009	1132	9	1	1	2	2	2	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0010	1122	8	7	1	0	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0011	1125	5	1	3	1	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0012	1107	5	0	1	4	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0013	1134	4	2	2	0	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0014	1127	4	0	1	3	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0015	1120	4	2	0	2	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0016	1120	4	4	0	0	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0017	1114	3	3	0	0	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0018	1136	2	0	1	1	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0019	1133	2	1	0	1	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0020	1129	2	0	0	2	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0021	1107	2	0	1	0	0	1	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0022	1132	2	1	0	0	0	1	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0023	1128	2	2	0	0	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0024	1119	2	0	0	1	0	1	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0025	1104	2	1	1	0	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0026	1104	2	2	0	0	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0027	1108	1	0	0	1	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0028	1134	1	0	0	1	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0029	1130	1	0	0	1	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0030	1132	1	1	0	0	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0031	1122	1	1	0	0	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0032	1114	1	1	0	0	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0033	1138	1	1	0	0	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0034	1131	1	0	0	1	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0035	1131	1	0	1	0	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0036	1129	1	1	0	0	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0037	1123	1	0	0	0	0	1	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0038	1123	1	1	0	0	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0039	1116	1	1	0	0	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0040	1108	1	0	1	0	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0041	1107	1	1	0	0	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0042	1106	1	0	0	0	0	1	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0043	1134	1	1	0	0	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0044	1133	1	0	0	0	0	1	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0045	1128	1	1	0	0	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0046	1126	1	0	0	1	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0047	1124	1	0	0	0	0	1	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0048	1121	1	1	0	0	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0049	1118	1	1	0	0	0	0	copy fasta	PWWP2A	chr5	160086339	160124450