JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PWWP2A_chr5_160086339_160124450	0/0	t0050	1108	1	0	0	1	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0051	1120	1	1	0	0	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0052	1119	1	0	0	1	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0053	1117	1	0	0	1	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0054	1107	1	0	0	1	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0055	1109	1	1	0	0	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0056	1106	1	1	0	0	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0057	1124	1	1	0	0	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	t0058	1125	1	0	1	0	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2B_chr10_132392200_132422859	1/1	t0001	843	354	94	78	127	16	37	copy fasta	PWWP2B	chr10	132392200	132422859
PWWP2B_chr10_132392200_132422859	0/0	t0002	843	7	0	0	7	0	0	copy fasta	PWWP2B	chr10	132392200	132422859
PWWP2B_chr10_132392200_132422859	0/0	t0003	843	3	0	3	0	0	0	copy fasta	PWWP2B	chr10	132392200	132422859
PWWP2B_chr10_132392200_132422859	0/0	t0004	843	2	0	0	0	0	2	copy fasta	PWWP2B	chr10	132392200	132422859
PWWP2B_chr10_132392200_132422859	0/0	t0005	786	1	0	0	1	0	0	copy fasta	PWWP2B	chr10	132392200	132422859
PWWP2B_chr10_132392200_132422859	0/0	t0006	843	1	1	0	0	0	0	copy fasta	PWWP2B	chr10	132392200	132422859
PWWP2B_chr10_132392200_132422859	0/0	t0007	843	1	1	0	0	0	0	copy fasta	PWWP2B	chr10	132392200	132422859
PWWP2B_chr10_132392200_132422859	0/0	t0008	843	1	0	1	0	0	0	copy fasta	PWWP2B	chr10	132392200	132422859
PWWP2B_chr10_132392200_132422859	0/0	t0009	843	1	1	0	0	0	0	copy fasta	PWWP2B	chr10	132392200	132422859
PWWP2B_chr10_132392200_132422859	0/0	t0010	843	1	0	0	0	0	1	copy fasta	PWWP2B	chr10	132392200	132422859
PWWP2B_chr10_132392200_132422859	0/0	t0011	843	1	0	0	1	0	0	copy fasta	PWWP2B	chr10	132392200	132422859
PWWP2B_chr10_132392200_132422859	0/0	t0012	843	1	1	0	0	0	0	copy fasta	PWWP2B	chr10	132392200	132422859
PWWP3A_chr19_1349959_1383429	0/0	t0001	2097	116	10	28	53	6	19	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	1/0	t0002	2100	88	5	12	58	1	11	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	t0003	2100	57	4	11	35	3	4	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	t0004	2097	44	26	9	2	1	6	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	t0005	2100	22	0	1	17	1	3	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	t0006	2097	17	14	1	0	0	2	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	t0007	2100	14	13	0	0	0	1	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	t0008	2100	12	0	0	10	1	1	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	t0009	2097	6	6	0	0	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	t0010	2097	4	1	1	0	2	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/1	t0011	2106	3	0	1	1	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	t0012	2100	2	0	0	2	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	t0013	2100	2	2	0	0	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	t0014	2097	2	0	0	2	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	t0015	2097	2	0	0	2	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	t0016	2097	2	2	0	0	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	t0017	2115	1	0	0	0	1	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	t0018	2106	1	1	0	0	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	t0019	2106	1	1	0	0	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	t0020	2106	1	0	0	1	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	t0021	2100	1	0	0	1	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	t0022	2100	1	0	0	1	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	t0023	2100	1	0	0	1	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	t0024	2100	1	0	0	1	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	t0025	2100	1	0	0	1	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	t0026	2100	1	0	0	0	0	1	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	t0027	2100	1	1	0	0	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	t0028	2097	1	1	0	0	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	t0029	2097	1	1	0	0	0	0	copy fasta	PWWP3A	chr19	1349959	1383429