JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PWWP3A_chr19_1349959_1383429	0/0	t0030	2097	1	0	0	1	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	t0031	2097	1	1	0	0	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	t0032	2097	1	1	0	0	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	t0033	2097	1	1	0	0	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	t0034	2097	1	0	0	1	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	t0035	2097	1	1	0	0	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3B_chrX_106163305_106213956	0/1	t0001	2083	231	60	46	94	8	22	copy fasta	PWWP3B	chrX	106163305	106213956
PWWP3B_chrX_106163305_106213956	0/0	t0002	2083	7	6	1	0	0	0	copy fasta	PWWP3B	chrX	106163305	106213956
PWWP3B_chrX_106163305_106213956	1/0	t0003	2083	5	1	0	0	1	2	copy fasta	PWWP3B	chrX	106163305	106213956
PWWP3B_chrX_106163305_106213956	0/0	t0004	2083	1	1	0	0	0	0	copy fasta	PWWP3B	chrX	106163305	106213956
PWWP3B_chrX_106163305_106213956	0/0	t0005	2083	1	1	0	0	0	0	copy fasta	PWWP3B	chrX	106163305	106213956
PWWP3B_chrX_106163305_106213956	0/0	t0006	2083	1	0	0	1	0	0	copy fasta	PWWP3B	chrX	106163305	106213956
PWWP3B_chrX_106163305_106213956	0/0	t0007	2083	1	0	0	1	0	0	copy fasta	PWWP3B	chrX	106163305	106213956
PWWP3B_chrX_106163305_106213956	0/0	t0008	2083	1	1	0	0	0	0	copy fasta	PWWP3B	chrX	106163305	106213956
PWWP4_chrX_153261152_153284145	0/0	t0001	1886	114	20	30	41	7	16	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	t0002	1886	8	8	0	0	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	t0003	1886	3	0	0	3	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	t0004	1886	2	1	1	0	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	t0005	1886	2	1	1	0	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	t0006	1886	2	2	0	0	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	t0007	1886	1	0	0	1	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	t0008	1886	1	1	0	0	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	t0009	1886	1	1	0	0	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	t0010	1886	1	0	0	0	0	1	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	t0011	1886	1	0	0	0	0	1	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	t0012	1886	1	0	0	0	0	1	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	t0013	1886	1	0	0	1	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	t0014	1886	1	1	0	0	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	t0015	1885	1	1	0	0	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	t0016	1887	1	1	0	0	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PXDC1_chr6_3717619_3756713	1/0	t0001	1183	122	24	30	57	0	10	copy fasta	PXDC1	chr6	3717619	3756713
PXDC1_chr6_3717619_3756713	0/1	t0002	1182	70	6	11	33	7	12	copy fasta	PXDC1	chr6	3717619	3756713
PXDC1_chr6_3717619_3756713	0/0	t0003	1183	62	19	5	33	1	4	copy fasta	PXDC1	chr6	3717619	3756713
PXDC1_chr6_3717619_3756713	0/0	t0004	1182	47	5	1	37	0	4	copy fasta	PXDC1	chr6	3717619	3756713
PXDC1_chr6_3717619_3756713	0/0	t0005	1183	30	20	5	2	1	2	copy fasta	PXDC1	chr6	3717619	3756713
PXDC1_chr6_3717619_3756713	0/0	t0006	1182	28	5	5	14	3	1	copy fasta	PXDC1	chr6	3717619	3756713
PXDC1_chr6_3717619_3756713	0/0	t0007	1183	6	0	6	0	0	0	copy fasta	PXDC1	chr6	3717619	3756713
PXDC1_chr6_3717619_3756713	0/0	t0008	1182	5	0	0	3	0	2	copy fasta	PXDC1	chr6	3717619	3756713
PXDC1_chr6_3717619_3756713	0/0	t0009	1183	5	0	0	5	0	0	copy fasta	PXDC1	chr6	3717619	3756713
PXDC1_chr6_3717619_3756713	0/0	t0010	1183	4	0	2	0	0	2	copy fasta	PXDC1	chr6	3717619	3756713
PXDC1_chr6_3717619_3756713	0/0	t0011	1183	4	4	0	0	0	0	copy fasta	PXDC1	chr6	3717619	3756713
PXDC1_chr6_3717619_3756713	0/0	t0012	1183	3	3	0	0	0	0	copy fasta	PXDC1	chr6	3717619	3756713
PXDC1_chr6_3717619_3756713	0/0	t0013	1183	3	0	0	3	0	0	copy fasta	PXDC1	chr6	3717619	3756713
PXDC1_chr6_3717619_3756713	0/0	t0014	1182	3	3	0	0	0	0	copy fasta	PXDC1	chr6	3717619	3756713
PXDC1_chr6_3717619_3756713	0/0	t0015	1183	3	2	1	0	0	0	copy fasta	PXDC1	chr6	3717619	3756713
PXDC1_chr6_3717619_3756713	0/0	t0016	1191	3	1	2	0	0	0	copy fasta	PXDC1	chr6	3717619	3756713
PXDC1_chr6_3717619_3756713	0/0	t0017	1183	2	0	2	0	0	0	copy fasta	PXDC1	chr6	3717619	3756713
PXDC1_chr6_3717619_3756713	0/0	t0018	1182	1	1	0	0	0	0	copy fasta	PXDC1	chr6	3717619	3756713
PXDC1_chr6_3717619_3756713	0/0	t0019	1183	1	0	0	1	0	0	copy fasta	PXDC1	chr6	3717619	3756713
PXDC1_chr6_3717619_3756713	0/0	t0020	1183	1	0	0	1	0	0	copy fasta	PXDC1	chr6	3717619	3756713