JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PXDC1_chr6_3717619_3756713	0/0	t0021	1183	1	0	0	1	0	0	copy fasta	PXDC1	chr6	3717619	3756713
PXDC1_chr6_3717619_3756713	0/0	t0022	1183	1	0	0	0	0	1	copy fasta	PXDC1	chr6	3717619	3756713
PXDC1_chr6_3717619_3756713	0/0	t0023	1183	1	1	0	0	0	0	copy fasta	PXDC1	chr6	3717619	3756713
PXDC1_chr6_3717619_3756713	0/0	t0024	1183	1	0	0	1	0	0	copy fasta	PXDC1	chr6	3717619	3756713
PXDC1_chr6_3717619_3756713	0/0	t0025	1182	1	0	1	0	0	0	copy fasta	PXDC1	chr6	3717619	3756713
PXDC1_chr6_3717619_3756713	0/0	t0026	1183	1	0	0	1	0	0	copy fasta	PXDC1	chr6	3717619	3756713
PXDC1_chr6_3717619_3756713	0/0	t0027	1190	1	1	0	0	0	0	copy fasta	PXDC1	chr6	3717619	3756713
PXDC1_chr6_3717619_3756713	0/0	t0028	1191	1	0	1	0	0	0	copy fasta	PXDC1	chr6	3717619	3756713
PXDC1_chr6_3717619_3756713	0/0	t0029	1191	1	1	0	0	0	0	copy fasta	PXDC1	chr6	3717619	3756713
PXDNL_chr8_51314577_51814445	1/0	t0001	416	72	39	10	18	1	3	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/1	t0002	416	31	4	8	12	1	5	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	t0003	422	17	15	2	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	t0004	422	1	1	0	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	t0005	416	1	1	0	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDN_chr2_1626887_1749515	0/1	t0001	2379	88	11	22	43	1	10	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	t0002	2379	82	10	14	44	2	12	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	t0003	2380	54	1	9	31	4	9	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	1/0	t0004	2378	23	18	1	0	3	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	t0005	2378	9	2	5	1	0	1	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	t0006	2379	8	8	0	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	t0007	2380	7	7	0	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	t0008	2379	6	6	0	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	t0009	2378	6	1	1	1	1	2	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	t0010	2379	5	5	0	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	t0011	2378	4	4	0	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	t0012	2378	4	1	0	3	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	t0013	2379	3	3	0	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	t0014	2379	2	2	0	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	t0015	2379	2	2	0	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	t0016	2380	1	1	0	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	t0017	2378	1	1	0	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	t0018	2379	1	0	1	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	t0019	2378	1	1	0	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	t0020	2379	1	0	1	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	t0021	2379	1	1	0	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	t0022	2378	1	1	0	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	t0023	2379	1	1	0	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	t0024	2380	1	1	0	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	t0025	2379	1	1	0	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	t0026	2378	1	1	0	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	t0027	2378	1	1	0	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	t0028	2378	1	1	0	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	t0029	2380	1	1	0	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	t0030	2380	1	0	0	1	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	t0031	2379	1	0	0	0	0	1	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	t0032	2380	1	0	0	0	1	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	t0033	2380	1	0	0	0	0	1	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	t0034	2378	1	1	0	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXK_chr3_58327892_58431127	1/0	t0001	1265	196	34	41	96	5	19	copy fasta	PXK	chr3	58327892	58431127
PXK_chr3_58327892_58431127	0/1	t0002	1263	52	26	15	0	1	9	copy fasta	PXK	chr3	58327892	58431127