JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PXK_chr3_58327892_58431127	0/0	t0003	1265	14	13	1	0	0	0	copy fasta	PXK	chr3	58327892	58431127
PXK_chr3_58327892_58431127	0/0	t0004	1265	10	10	0	0	0	0	copy fasta	PXK	chr3	58327892	58431127
PXK_chr3_58327892_58431127	0/0	t0005	1265	7	6	1	0	0	0	copy fasta	PXK	chr3	58327892	58431127
PXK_chr3_58327892_58431127	0/0	t0006	1265	7	2	3	0	2	0	copy fasta	PXK	chr3	58327892	58431127
PXK_chr3_58327892_58431127	0/0	t0007	1265	6	1	3	0	1	1	copy fasta	PXK	chr3	58327892	58431127
PXK_chr3_58327892_58431127	0/0	t0008	1265	3	0	0	0	1	2	copy fasta	PXK	chr3	58327892	58431127
PXK_chr3_58327892_58431127	0/0	t0009	1265	2	2	0	0	0	0	copy fasta	PXK	chr3	58327892	58431127
PXK_chr3_58327892_58431127	0/0	t0010	1263	1	0	1	0	0	0	copy fasta	PXK	chr3	58327892	58431127
PXK_chr3_58327892_58431127	0/0	t0011	1265	1	0	1	0	0	0	copy fasta	PXK	chr3	58327892	58431127
PXK_chr3_58327892_58431127	0/0	t0012	1265	1	0	0	0	0	1	copy fasta	PXK	chr3	58327892	58431127
PXMP2_chr12_132682587_132709985	1/0	t0001	383	215	62	44	74	10	24	copy fasta	PXMP2	chr12	132682587	132709985
PXMP2_chr12_132682587_132709985	0/1	t0002	383	94	20	25	28	5	15	copy fasta	PXMP2	chr12	132682587	132709985
PXMP2_chr12_132682587_132709985	0/0	t0003	383	25	1	7	13	1	3	copy fasta	PXMP2	chr12	132682587	132709985
PXMP2_chr12_132682587_132709985	0/0	t0004	383	6	5	1	0	0	0	copy fasta	PXMP2	chr12	132682587	132709985
PXMP2_chr12_132682587_132709985	0/0	t0005	383	5	4	1	0	0	0	copy fasta	PXMP2	chr12	132682587	132709985
PXMP2_chr12_132682587_132709985	0/0	t0006	383	2	0	2	0	0	0	copy fasta	PXMP2	chr12	132682587	132709985
PXMP2_chr12_132682587_132709985	0/0	t0007	383	2	0	0	2	0	0	copy fasta	PXMP2	chr12	132682587	132709985
PXMP2_chr12_132682587_132709985	0/0	t0008	383	1	0	0	1	0	0	copy fasta	PXMP2	chr12	132682587	132709985
PXMP4_chr20_33697758_33725310	0/0	t0001	5052	81	21	14	34	6	6	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	1/1	t0002	5052	65	6	20	20	3	14	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0003	5052	63	2	6	40	2	13	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0004	5051	21	1	3	10	2	5	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0005	5052	14	0	0	14	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0006	5052	12	0	0	12	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0007	5052	11	8	3	0	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0008	5053	8	0	2	3	1	2	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0009	5052	7	6	1	0	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0010	5052	7	6	0	1	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0011	5052	5	0	3	0	2	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0012	5052	5	5	0	0	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0013	5052	5	4	1	0	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0014	5053	4	1	1	1	0	1	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0015	5052	4	4	0	0	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0016	5052	4	0	0	4	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0017	5051	4	4	0	0	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0018	5053	4	0	2	1	0	1	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0019	5051	3	0	1	2	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0020	5052	3	0	0	3	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0021	5050	3	3	0	0	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0022	5053	3	0	1	2	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0023	5050	3	3	0	0	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0024	5053	2	0	2	0	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0025	5052	2	0	0	1	1	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0026	5051	2	2	0	0	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0027	5052	2	0	2	0	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0028	5053	2	0	1	1	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0029	5052	2	0	1	0	1	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0030	5050	2	2	0	0	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0031	5052	1	1	0	0	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0032	5053	1	0	0	0	0	1	copy fasta	PXMP4	chr20	33697758	33725310