Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATRNL1_chr10_115088365_115953999	0/0	t0021	4609	1	1	0	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	t0022	4607	1	1	0	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	t0023	4607	1	1	0	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	t0024	4609	1	1	0	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	t0025	4610	1	1	0	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	t0026	4609	1	1	0	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	t0027	4607	1	1	0	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	t0028	4609	1	0	0	0	0	1	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	t0029	4609	1	0	0	1	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	t0030	4608	1	1	0	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	t0031	4609	1	1	0	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	t0032	4609	1	0	1	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	t0033	4609	1	1	0	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	t0034	4610	1	1	0	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	t0035	4609	1	1	0	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	t0036	4609	1	1	0	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	t0037	4607	1	1	0	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	t0038	4609	1	1	0	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	t0039	4609	1	1	0	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	1/0	t0040	4607	1	0	0	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	t0041	4609	1	1	0	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	t0042	4609	1	1	0	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	t0043	4609	1	1	0	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	t0044	4609	1	0	1	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	t0045	4607	1	1	0	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	t0046	4609	1	0	0	1	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	t0047	4609	1	1	0	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	t0048	4609	1	1	0	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRN_chr20_3466018_3656118	0/0	t0001	4367	33	0	10	18	0	5	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	t0002	4367	28	10	6	9	0	3	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/1	t0003	4368	27	9	8	0	4	5	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	t0004	4368	21	21	0	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	t0005	4367	16	1	7	1	4	3	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	t0006	4368	14	0	7	7	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	1/0	t0007	4362	12	1	8	0	2	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	t0008	4367	10	10	0	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	t0009	4365	7	0	0	7	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	t0010	4367	5	4	1	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	t0011	4368	4	4	0	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	t0012	4368	4	4	0	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	t0013	4371	4	4	0	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	t0014	4367	3	3	0	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	t0015	4368	3	3	0	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	t0016	4368	2	0	0	0	0	2	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	t0017	4368	2	2	0	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	t0018	4365	2	0	1	0	1	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	t0019	4367	2	2	0	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	t0020	4367	2	2	0	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	t0021	4367	2	0	2	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	t0022	4368	1	0	1	0	0	0	copy fasta	ATRN	chr20	3466018	3656118