JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PXMP4_chr20_33697758_33725310	0/0	t0033	5053	1	0	0	0	0	1	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0034	5042	1	0	1	0	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0035	5052	1	0	1	0	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0036	5052	1	1	0	0	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0037	5052	1	0	0	0	0	1	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0038	5052	1	0	1	0	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0039	5052	1	0	1	0	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0040	5052	1	0	1	0	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0041	5053	1	1	0	0	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0042	5053	1	0	1	0	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0043	5052	1	1	0	0	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0044	5051	1	1	0	0	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0045	5052	1	1	0	0	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0046	5053	1	0	1	0	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0047	5052	1	1	0	0	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0048	5052	1	1	0	0	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0049	5052	1	0	0	1	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0050	5051	1	1	0	0	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0051	5051	1	0	0	1	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0052	5051	1	0	1	0	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0053	5052	1	1	0	0	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0054	5053	1	1	0	0	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0055	5052	1	0	0	1	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0056	5052	1	0	0	1	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0057	5051	1	0	0	1	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0058	5051	1	1	0	0	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0059	5051	1	0	0	0	0	1	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0060	5051	1	0	0	1	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0061	5051	1	0	0	1	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0062	5051	1	1	0	0	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0063	5050	1	1	0	0	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0064	5051	1	1	0	0	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	t0065	5052	1	1	0	0	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXN_chr12_120205447_120270730	1/1	t0001	1969	206	70	31	80	7	16	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	t0002	1969	95	8	18	51	3	15	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	t0003	1970	10	9	1	0	0	0	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	t0004	1969	3	1	0	1	0	1	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	t0005	1969	1	0	0	0	0	1	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	t0006	1969	1	0	1	0	0	0	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	t0007	1969	1	0	1	0	0	0	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	t0008	1969	1	1	0	0	0	0	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	t0009	1969	1	0	0	1	0	0	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	t0010	1969	1	0	0	0	0	1	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	t0011	1969	1	1	0	0	0	0	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	t0012	1969	1	1	0	0	0	0	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	t0013	1969	1	1	0	0	0	0	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	t0014	1969	1	0	0	1	0	0	copy fasta	PXN	chr12	120205447	120270730
PXT1_chr6_36385551_36447854	1/1	t0001	1669	369	71	71	173	12	40	copy fasta	PXT1	chr6	36385551	36447854
PXT1_chr6_36385551_36447854	0/0	t0002	1669	6	6	0	0	0	0	copy fasta	PXT1	chr6	36385551	36447854
PXT1_chr6_36385551_36447854	0/0	t0003	1669	5	5	0	0	0	0	copy fasta	PXT1	chr6	36385551	36447854