JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PXT1_chr6_36385551_36447854	0/0	t0004	1669	2	2	0	0	0	0	copy fasta	PXT1	chr6	36385551	36447854
PXT1_chr6_36385551_36447854	0/0	t0005	1669	2	1	1	0	0	0	copy fasta	PXT1	chr6	36385551	36447854
PXT1_chr6_36385551_36447854	0/0	t0006	1669	1	0	0	1	0	0	copy fasta	PXT1	chr6	36385551	36447854
PXT1_chr6_36385551_36447854	0/0	t0007	1669	1	1	0	0	0	0	copy fasta	PXT1	chr6	36385551	36447854
PXT1_chr6_36385551_36447854	0/0	t0008	1669	1	1	0	0	0	0	copy fasta	PXT1	chr6	36385551	36447854
PXT1_chr6_36385551_36447854	0/0	t0009	1669	1	1	0	0	0	0	copy fasta	PXT1	chr6	36385551	36447854
PXT1_chr6_36385551_36447854	0/0	t0010	1669	1	1	0	0	0	0	copy fasta	PXT1	chr6	36385551	36447854
PXT1_chr6_36385551_36447854	0/0	t0011	1669	1	1	0	0	0	0	copy fasta	PXT1	chr6	36385551	36447854
PXYLP1_chr3_141226825_141299924	1/1	t0001	1860	165	8	39	88	8	20	copy fasta	PXYLP1	chr3	141226825	141299924
PXYLP1_chr3_141226825_141299924	0/0	t0002	1860	110	37	14	46	4	9	copy fasta	PXYLP1	chr3	141226825	141299924
PXYLP1_chr3_141226825_141299924	0/0	t0003	1860	53	24	7	22	0	0	copy fasta	PXYLP1	chr3	141226825	141299924
PXYLP1_chr3_141226825_141299924	0/0	t0004	1854	17	0	9	3	3	2	copy fasta	PXYLP1	chr3	141226825	141299924
PXYLP1_chr3_141226825_141299924	0/0	t0005	1860	9	9	0	0	0	0	copy fasta	PXYLP1	chr3	141226825	141299924
PXYLP1_chr3_141226825_141299924	0/0	t0006	1860	6	5	1	0	0	0	copy fasta	PXYLP1	chr3	141226825	141299924
PXYLP1_chr3_141226825_141299924	0/0	t0007	1860	4	0	0	4	0	0	copy fasta	PXYLP1	chr3	141226825	141299924
PXYLP1_chr3_141226825_141299924	0/0	t0008	1860	3	0	2	0	1	0	copy fasta	PXYLP1	chr3	141226825	141299924
PXYLP1_chr3_141226825_141299924	0/0	t0009	1860	2	2	0	0	0	0	copy fasta	PXYLP1	chr3	141226825	141299924
PXYLP1_chr3_141226825_141299924	0/0	t0010	1860	2	2	0	0	0	0	copy fasta	PXYLP1	chr3	141226825	141299924
PXYLP1_chr3_141226825_141299924	0/0	t0011	1860	2	0	0	2	0	0	copy fasta	PXYLP1	chr3	141226825	141299924
PXYLP1_chr3_141226825_141299924	0/0	t0012	1860	2	1	1	0	0	0	copy fasta	PXYLP1	chr3	141226825	141299924
PXYLP1_chr3_141226825_141299924	0/0	t0013	1860	2	2	0	0	0	0	copy fasta	PXYLP1	chr3	141226825	141299924
PXYLP1_chr3_141226825_141299924	0/0	t0014	1860	2	2	0	0	0	0	copy fasta	PXYLP1	chr3	141226825	141299924
PXYLP1_chr3_141226825_141299924	0/0	t0015	1860	1	0	1	0	0	0	copy fasta	PXYLP1	chr3	141226825	141299924
PXYLP1_chr3_141226825_141299924	0/0	t0016	1860	1	0	0	0	0	1	copy fasta	PXYLP1	chr3	141226825	141299924
PXYLP1_chr3_141226825_141299924	0/0	t0017	1860	1	1	0	0	0	0	copy fasta	PXYLP1	chr3	141226825	141299924
PXYLP1_chr3_141226825_141299924	0/0	t0018	1860	1	0	0	1	0	0	copy fasta	PXYLP1	chr3	141226825	141299924
PXYLP1_chr3_141226825_141299924	0/0	t0019	1860	1	1	0	0	0	0	copy fasta	PXYLP1	chr3	141226825	141299924
PYCARD_chr16_31196486_31207760	1/1	t0001	170	342	78	74	140	16	32	copy fasta	PYCARD	chr16	31196486	31207760
PYCARD_chr16_31196486_31207760	0/0	t0002	170	10	10	0	0	0	0	copy fasta	PYCARD	chr16	31196486	31207760
PYCARD_chr16_31196486_31207760	0/0	t0003	170	2	2	0	0	0	0	copy fasta	PYCARD	chr16	31196486	31207760
PYCR1_chr17_81927391_81942300	1/1	t0001	1310	352	93	69	136	14	38	copy fasta	PYCR1	chr17	81927391	81942300
PYCR1_chr17_81927391_81942300	0/0	t0002	1310	19	0	6	12	0	1	copy fasta	PYCR1	chr17	81927391	81942300
PYCR1_chr17_81927391_81942300	0/0	t0003	1310	1	0	0	0	0	1	copy fasta	PYCR1	chr17	81927391	81942300
PYCR1_chr17_81927391_81942300	0/0	t0004	1310	1	1	0	0	0	0	copy fasta	PYCR1	chr17	81927391	81942300
PYCR1_chr17_81927391_81942300	0/0	t0005	1310	1	1	0	0	0	0	copy fasta	PYCR1	chr17	81927391	81942300
PYCR1_chr17_81927391_81942300	0/0	t0006	1310	1	1	0	0	0	0	copy fasta	PYCR1	chr17	81927391	81942300
PYCR1_chr17_81927391_81942300	0/0	t0007	1310	1	0	1	0	0	0	copy fasta	PYCR1	chr17	81927391	81942300
PYCR2_chr1_225914878_225929250	1/1	t0001	718	347	76	62	159	12	36	copy fasta	PYCR2	chr1	225914878	225929250
PYCR2_chr1_225914878_225929250	0/0	t0002	718	30	0	8	16	1	5	copy fasta	PYCR2	chr1	225914878	225929250
PYCR2_chr1_225914878_225929250	0/0	t0003	718	23	2	0	21	0	0	copy fasta	PYCR2	chr1	225914878	225929250
PYCR2_chr1_225914878_225929250	0/0	t0004	718	13	1	7	0	5	0	copy fasta	PYCR2	chr1	225914878	225929250
PYCR2_chr1_225914878_225929250	0/0	t0005	718	12	9	3	0	0	0	copy fasta	PYCR2	chr1	225914878	225929250
PYCR2_chr1_225914878_225929250	0/0	t0006	718	11	0	0	11	0	0	copy fasta	PYCR2	chr1	225914878	225929250
PYCR2_chr1_225914878_225929250	0/0	t0007	718	4	4	0	0	0	0	copy fasta	PYCR2	chr1	225914878	225929250
PYCR2_chr1_225914878_225929250	0/0	t0008	718	1	0	0	1	0	0	copy fasta	PYCR2	chr1	225914878	225929250
PYCR2_chr1_225914878_225929250	0/0	t0009	718	1	1	0	0	0	0	copy fasta	PYCR2	chr1	225914878	225929250
PYCR2_chr1_225914878_225929250	0/0	t0010	718	1	0	0	0	0	1	copy fasta	PYCR2	chr1	225914878	225929250
PYCR2_chr1_225914878_225929250	0/0	t0011	718	1	0	0	1	0	0	copy fasta	PYCR2	chr1	225914878	225929250
PYCR2_chr1_225914878_225929250	0/0	t0012	702	1	0	0	1	0	0	copy fasta	PYCR2	chr1	225914878	225929250
PYCR2_chr1_225914878_225929250	0/0	t0013	718	1	0	0	0	0	1	copy fasta	PYCR2	chr1	225914878	225929250