JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PYCR2_chr1_225914878_225929250	0/0	t0014	718	1	1	0	0	0	0	copy fasta	PYCR2	chr1	225914878	225929250
PYCR2_chr1_225914878_225929250	0/0	t0015	718	1	0	0	0	0	1	copy fasta	PYCR2	chr1	225914878	225929250
PYCR3_chr8_143598210_143614575	0/0	t0001	2522	202	23	45	92	11	31	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	t0002	2518	71	31	6	30	0	4	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	t0003	2522	58	15	13	18	1	11	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	t0004	2522	56	1	6	49	0	0	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	t0005	2522	8	0	1	7	0	0	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	t0006	2518	8	3	2	0	2	1	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	t0007	2518	6	6	0	0	0	0	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	t0008	2518	5	5	0	0	0	0	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	t0009	2522	4	0	0	4	0	0	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	t0010	2522	3	3	0	0	0	0	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	t0011	2518	2	2	0	0	0	0	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	t0012	2518	2	0	0	2	0	0	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	t0013	2522	2	0	2	0	0	0	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	t0014	2522	2	2	0	0	0	0	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	t0015	2522	1	0	0	1	0	0	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	t0016	2538	1	1	0	0	0	0	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/1	t0017	2522	1	0	0	0	0	0	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	t0018	2522	1	1	0	0	0	0	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	t0019	2522	1	0	1	0	0	0	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	t0020	2522	1	1	0	0	0	0	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	t0021	2522	1	0	0	0	0	1	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	t0022	2522	1	0	0	1	0	0	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	t0023	2522	1	0	0	1	0	0	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	t0024	2518	1	0	0	1	0	0	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	t0025	2522	1	0	0	1	0	0	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	t0026	2518	1	1	0	0	0	0	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	t0027	2518	1	0	1	0	0	0	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	t0028	2518	1	0	0	1	0	0	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	t0029	2522	1	0	1	0	0	0	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	t0030	2518	1	1	0	0	0	0	copy fasta	PYCR3	chr8	143598210	143614575
PYDC1_chr16_31210962_31222135	1/1	t0001	320	344	90	64	140	16	32	copy fasta	PYDC1	chr16	31210962	31222135
PYDC1_chr16_31210962_31222135	0/0	t0002	320	2	2	0	0	0	0	copy fasta	PYDC1	chr16	31210962	31222135
PYDC5_chr1_158994971_159007751	0/1	t0001	2440	153	2	49	82	6	13	copy fasta	PYDC5	chr1	158994971	159007751
PYDC5_chr1_158994971_159007751	0/0	t0002	2440	124	26	22	54	5	17	copy fasta	PYDC5	chr1	158994971	159007751
PYDC5_chr1_158994971_159007751	0/0	t0003	2440	76	30	8	34	1	3	copy fasta	PYDC5	chr1	158994971	159007751
PYDC5_chr1_158994971_159007751	0/0	t0004	2443	56	4	0	42	0	10	copy fasta	PYDC5	chr1	158994971	159007751
PYDC5_chr1_158994971_159007751	1/0	t0005	2440	16	15	0	0	0	0	copy fasta	PYDC5	chr1	158994971	159007751
PYDC5_chr1_158994971_159007751	0/0	t0006	2440	12	12	0	0	0	0	copy fasta	PYDC5	chr1	158994971	159007751
PYDC5_chr1_158994971_159007751	0/0	t0007	2440	6	6	0	0	0	0	copy fasta	PYDC5	chr1	158994971	159007751
PYDC5_chr1_158994971_159007751	0/0	t0008	2443	6	0	0	6	0	0	copy fasta	PYDC5	chr1	158994971	159007751
PYDC5_chr1_158994971_159007751	0/0	t0009	2443	3	0	0	3	0	0	copy fasta	PYDC5	chr1	158994971	159007751
PYDC5_chr1_158994971_159007751	0/0	t0010	2440	2	2	0	0	0	0	copy fasta	PYDC5	chr1	158994971	159007751
PYDC5_chr1_158994971_159007751	0/0	t0011	2443	1	0	0	0	0	1	copy fasta	PYDC5	chr1	158994971	159007751
PYDC5_chr1_158994971_159007751	0/0	t0012	2440	1	0	1	0	0	0	copy fasta	PYDC5	chr1	158994971	159007751
PYDC5_chr1_158994971_159007751	0/0	t0013	2440	1	1	0	0	0	0	copy fasta	PYDC5	chr1	158994971	159007751
PYDC5_chr1_158994971_159007751	0/0	t0014	2440	1	1	0	0	0	0	copy fasta	PYDC5	chr1	158994971	159007751
PYDC5_chr1_158994971_159007751	0/0	t0015	2440	1	1	0	0	0	0	copy fasta	PYDC5	chr1	158994971	159007751
PYDC5_chr1_158994971_159007751	0/0	t0016	2440	1	0	0	1	0	0	copy fasta	PYDC5	chr1	158994971	159007751