JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PYGB_chr20_25243085_25303012	0/1	t0001	1590	186	24	27	112	4	18	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	1/0	t0002	1585	144	44	45	22	9	23	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	0/0	t0003	1585	19	14	2	0	0	3	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	0/0	t0004	1585	4	4	0	0	0	0	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	0/0	t0005	1585	3	1	1	0	1	0	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	0/0	t0006	1585	2	0	0	0	0	2	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	0/0	t0007	1575	2	2	0	0	0	0	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	0/0	t0008	1585	2	2	0	0	0	0	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	0/0	t0009	1585	2	2	0	0	0	0	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	0/0	t0010	1585	1	1	0	0	0	0	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	0/0	t0011	1585	1	1	0	0	0	0	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	0/0	t0012	1585	1	1	0	0	0	0	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	0/0	t0013	1585	1	0	0	1	0	0	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	0/0	t0014	1590	1	0	0	1	0	0	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	0/0	t0015	1590	1	0	0	1	0	0	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	0/0	t0016	1590	1	0	1	0	0	0	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	0/0	t0017	1590	1	0	0	1	0	0	copy fasta	PYGB	chr20	25243085	25303012
PYGL_chr14_50900217_50949483	1/1	t0001	256	170	34	28	70	12	24	copy fasta	PYGL	chr14	50900217	50949483
PYGL_chr14_50900217_50949483	0/0	t0002	255	114	45	16	45	1	7	copy fasta	PYGL	chr14	50900217	50949483
PYGL_chr14_50900217_50949483	0/0	t0003	255	104	6	20	67	3	8	copy fasta	PYGL	chr14	50900217	50949483
PYGL_chr14_50900217_50949483	0/0	t0004	256	1	0	0	0	0	1	copy fasta	PYGL	chr14	50900217	50949483
PYGL_chr14_50900217_50949483	0/0	t0005	255	1	1	0	0	0	0	copy fasta	PYGL	chr14	50900217	50949483
PYGM_chr11_64741398_64764974	1/1	t0001	338	344	92	62	140	12	36	copy fasta	PYGM	chr11	64741398	64764974
PYGM_chr11_64741398_64764974	0/0	t0002	338	4	0	0	4	0	0	copy fasta	PYGM	chr11	64741398	64764974
PYGM_chr11_64741398_64764974	0/0	t0003	338	1	1	0	0	0	0	copy fasta	PYGM	chr11	64741398	64764974
PYGM_chr11_64741398_64764974	0/0	t0004	338	1	1	0	0	0	0	copy fasta	PYGM	chr11	64741398	64764974
PYGO1_chr15_55533884_55593345	0/0	t0001	7603	60	3	6	47	0	4	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0002	7604	59	13	11	23	3	9	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	1/0	t0003	7602	43	0	0	40	0	2	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/1	t0004	7601	42	1	25	1	5	9	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0005	7604	18	0	0	18	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0006	7599	13	0	0	12	1	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0007	7600	10	0	2	8	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0008	7599	9	0	0	6	1	2	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0009	7602	8	8	0	0	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0010	7603	8	8	0	0	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0011	7604	8	8	0	0	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0012	7607	7	0	3	0	1	3	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0013	7604	6	0	5	1	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0014	7604	6	1	2	0	1	2	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0015	7603	5	0	0	5	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0016	7602	5	5	0	0	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0017	7604	5	0	0	5	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0018	7603	4	3	0	0	0	1	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0019	7601	4	0	2	0	0	2	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0020	7602	4	4	0	0	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0021	7603	4	4	0	0	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0022	7599	4	4	0	0	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0023	7602	4	0	0	4	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0024	7605	3	0	0	0	0	3	copy fasta	PYGO1	chr15	55533884	55593345