JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PYGO1_chr15_55533884_55593345	0/0	t0025	7604	2	0	1	0	0	1	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0026	7604	2	0	2	0	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0027	7599	2	2	0	0	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0028	7603	2	1	1	0	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0029	7602	2	0	0	2	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0030	7599	2	0	0	2	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0031	7599	2	2	0	0	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0032	7600	2	0	0	0	0	2	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0033	7600	2	0	0	2	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0034	7602	2	2	0	0	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0035	7602	2	2	0	0	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0036	7604	2	0	2	0	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0037	7601	2	2	0	0	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0038	7603	2	0	0	2	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0039	7633	1	0	0	1	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0040	7599	1	1	0	0	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0041	7598	1	0	0	0	0	1	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0042	7602	1	1	0	0	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0043	7601	1	0	0	0	0	1	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0044	7601	1	0	0	0	1	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0045	7602	1	0	1	0	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0046	7603	1	0	0	0	0	1	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0047	7602	1	1	0	0	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0048	7602	1	1	0	0	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0049	7602	1	1	0	0	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0050	7601	1	0	1	0	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0051	7602	1	1	0	0	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0052	7605	1	0	0	1	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0053	7603	1	0	0	1	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0054	7603	1	0	0	1	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0055	7603	1	1	0	0	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0056	7603	1	0	0	1	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0057	7603	1	1	0	0	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0058	7599	1	1	0	0	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0059	7601	1	0	0	1	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0060	7599	1	1	0	0	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0061	7599	1	0	0	1	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0062	7604	1	0	0	1	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0063	7604	1	0	0	1	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0064	7602	1	0	0	0	0	1	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0065	7603	1	1	0	0	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0066	7603	1	0	0	0	0	1	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0067	7604	1	1	0	0	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0068	7604	1	0	0	1	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0069	7604	1	1	0	0	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0070	7604	1	0	1	0	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0071	7604	1	1	0	0	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0072	7603	1	0	0	1	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0073	7605	1	0	0	0	0	1	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0074	7604	1	1	0	0	0	0	copy fasta	PYGO1	chr15	55533884	55593345