JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PYGO1_chr15_55533884_55593345	0/0	t0075	7601	1	1	0	0	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0076	7603	1	0	0	1	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0077	7599	1	0	0	1	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0078	7600	1	0	0	1	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0079	7605	1	1	0	0	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0080	7605	1	1	0	0	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0081	7607	1	1	0	0	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0082	7608	1	0	0	0	1	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	t0083	7602	1	0	1	0	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO2_chr1_154952026_154966782	1/1	t0001	1960	263	71	46	112	9	23	copy fasta	PYGO2	chr1	154952026	154966782
PYGO2_chr1_154952026_154966782	0/0	t0002	1960	18	17	1	0	0	0	copy fasta	PYGO2	chr1	154952026	154966782
PYGO2_chr1_154952026_154966782	0/0	t0003	1960	9	0	6	0	1	2	copy fasta	PYGO2	chr1	154952026	154966782
PYGO2_chr1_154952026_154966782	0/0	t0004	1960	2	0	2	0	0	0	copy fasta	PYGO2	chr1	154952026	154966782
PYGO2_chr1_154952026_154966782	0/0	t0005	1960	1	0	1	0	0	0	copy fasta	PYGO2	chr1	154952026	154966782
PYGO2_chr1_154952026_154966782	0/0	t0006	1960	1	1	0	0	0	0	copy fasta	PYGO2	chr1	154952026	154966782
PYGO2_chr1_154952026_154966782	0/0	t0007	1960	1	0	0	1	0	0	copy fasta	PYGO2	chr1	154952026	154966782
PYGO2_chr1_154952026_154966782	0/0	t0008	1960	1	1	0	0	0	0	copy fasta	PYGO2	chr1	154952026	154966782
PYGO2_chr1_154952026_154966782	0/0	t0009	1960	1	0	0	1	0	0	copy fasta	PYGO2	chr1	154952026	154966782
PYGO2_chr1_154952026_154966782	0/0	t0010	1960	1	1	0	0	0	0	copy fasta	PYGO2	chr1	154952026	154966782
PYGO2_chr1_154952026_154966782	0/0	t0011	1960	1	0	0	0	0	1	copy fasta	PYGO2	chr1	154952026	154966782
PYGO2_chr1_154952026_154966782	0/0	t0012	1960	1	1	0	0	0	0	copy fasta	PYGO2	chr1	154952026	154966782
PYGO2_chr1_154952026_154966782	0/0	t0013	1960	1	0	0	1	0	0	copy fasta	PYGO2	chr1	154952026	154966782
PYGO2_chr1_154952026_154966782	0/0	t0014	1960	1	0	0	1	0	0	copy fasta	PYGO2	chr1	154952026	154966782
PYHIN1_chr1_158926552_158982059	0/1	t0001	593	238	33	50	131	7	16	copy fasta	PYHIN1	chr1	158926552	158982059
PYHIN1_chr1_158926552_158982059	0/0	t0002	592	29	2	0	21	0	6	copy fasta	PYHIN1	chr1	158926552	158982059
PYHIN1_chr1_158926552_158982059	0/0	t0003	595	28	2	5	9	3	9	copy fasta	PYHIN1	chr1	158926552	158982059
PYHIN1_chr1_158926552_158982059	0/0	t0004	599	15	14	1	0	0	0	copy fasta	PYHIN1	chr1	158926552	158982059
PYHIN1_chr1_158926552_158982059	0/0	t0005	594	14	0	0	12	0	2	copy fasta	PYHIN1	chr1	158926552	158982059
PYHIN1_chr1_158926552_158982059	1/0	t0006	610	12	11	0	0	0	0	copy fasta	PYHIN1	chr1	158926552	158982059
PYHIN1_chr1_158926552_158982059	0/0	t0007	593	8	7	1	0	0	0	copy fasta	PYHIN1	chr1	158926552	158982059
PYHIN1_chr1_158926552_158982059	0/0	t0008	601	8	1	4	0	1	2	copy fasta	PYHIN1	chr1	158926552	158982059
PYHIN1_chr1_158926552_158982059	0/0	t0009	597	7	3	3	1	0	0	copy fasta	PYHIN1	chr1	158926552	158982059
PYHIN1_chr1_158926552_158982059	0/0	t0010	606	5	5	0	0	0	0	copy fasta	PYHIN1	chr1	158926552	158982059
PYHIN1_chr1_158926552_158982059	0/0	t0011	606	4	4	0	0	0	0	copy fasta	PYHIN1	chr1	158926552	158982059
PYHIN1_chr1_158926552_158982059	0/0	t0012	593	3	0	2	0	1	0	copy fasta	PYHIN1	chr1	158926552	158982059
PYHIN1_chr1_158926552_158982059	0/0	t0013	596	3	0	0	3	0	0	copy fasta	PYHIN1	chr1	158926552	158982059
PYHIN1_chr1_158926552_158982059	0/0	t0014	600	3	3	0	0	0	0	copy fasta	PYHIN1	chr1	158926552	158982059
PYHIN1_chr1_158926552_158982059	0/0	t0015	608	3	3	0	0	0	0	copy fasta	PYHIN1	chr1	158926552	158982059
PYHIN1_chr1_158926552_158982059	0/0	t0016	618	3	3	0	0	0	0	copy fasta	PYHIN1	chr1	158926552	158982059
PYHIN1_chr1_158926552_158982059	0/0	t0017	598	2	0	0	2	0	0	copy fasta	PYHIN1	chr1	158926552	158982059
PYHIN1_chr1_158926552_158982059	0/0	t0018	603	2	1	1	0	0	0	copy fasta	PYHIN1	chr1	158926552	158982059
PYHIN1_chr1_158926552_158982059	0/0	t0019	595	1	0	1	0	0	0	copy fasta	PYHIN1	chr1	158926552	158982059
PYHIN1_chr1_158926552_158982059	0/0	t0020	600	1	1	0	0	0	0	copy fasta	PYHIN1	chr1	158926552	158982059
PYHIN1_chr1_158926552_158982059	0/0	t0021	599	1	1	0	0	0	0	copy fasta	PYHIN1	chr1	158926552	158982059
PYHIN1_chr1_158926552_158982059	0/0	t0022	586	1	0	0	0	0	1	copy fasta	PYHIN1	chr1	158926552	158982059
PYHIN1_chr1_158926552_158982059	0/0	t0023	590	1	0	0	1	0	0	copy fasta	PYHIN1	chr1	158926552	158982059
PYHIN1_chr1_158926552_158982059	0/0	t0024	608	1	1	0	0	0	0	copy fasta	PYHIN1	chr1	158926552	158982059
PYHIN1_chr1_158926552_158982059	0/0	t0025	610	1	1	0	0	0	0	copy fasta	PYHIN1	chr1	158926552	158982059
PYHIN1_chr1_158926552_158982059	0/0	t0026	595	1	0	0	1	0	0	copy fasta	PYHIN1	chr1	158926552	158982059
PYHIN1_chr1_158926552_158982059	0/0	t0027	593	1	0	0	1	0	0	copy fasta	PYHIN1	chr1	158926552	158982059