JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PYHIN1_chr1_158926552_158982059	0/0	t0028	593	1	0	1	0	0	0	copy fasta	PYHIN1	chr1	158926552	158982059
PYHIN1_chr1_158926552_158982059	0/0	t0029	605	1	0	1	0	0	0	copy fasta	PYHIN1	chr1	158926552	158982059
PYM1_chr12_55896413_55932894	0/0	t0001	589	209	28	51	94	8	28	copy fasta	PYM1	chr12	55896413	55932894
PYM1_chr12_55896413_55932894	1/1	t0002	593	81	30	16	24	6	3	copy fasta	PYM1	chr12	55896413	55932894
PYM1_chr12_55896413_55932894	0/0	t0003	588	23	3	3	13	2	2	copy fasta	PYM1	chr12	55896413	55932894
PYM1_chr12_55896413_55932894	0/0	t0004	594	10	8	1	1	0	0	copy fasta	PYM1	chr12	55896413	55932894
PYM1_chr12_55896413_55932894	0/0	t0005	592	9	2	2	5	0	0	copy fasta	PYM1	chr12	55896413	55932894
PYM1_chr12_55896413_55932894	0/0	t0006	589	3	3	0	0	0	0	copy fasta	PYM1	chr12	55896413	55932894
PYM1_chr12_55896413_55932894	0/0	t0007	593	2	2	0	0	0	0	copy fasta	PYM1	chr12	55896413	55932894
PYM1_chr12_55896413_55932894	0/0	t0008	590	2	1	0	0	0	1	copy fasta	PYM1	chr12	55896413	55932894
PYM1_chr12_55896413_55932894	0/0	t0009	589	2	0	0	2	0	0	copy fasta	PYM1	chr12	55896413	55932894
PYM1_chr12_55896413_55932894	0/0	t0010	593	1	1	0	0	0	0	copy fasta	PYM1	chr12	55896413	55932894
PYM1_chr12_55896413_55932894	0/0	t0011	589	1	0	1	0	0	0	copy fasta	PYM1	chr12	55896413	55932894
PYM1_chr12_55896413_55932894	0/0	t0012	588	1	0	0	1	0	0	copy fasta	PYM1	chr12	55896413	55932894
PYROXD1_chr12_21432655_21476250	0/0	t0001	2576	97	1	19	59	6	12	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	t0002	2573	83	10	17	40	6	10	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	t0003	2572	66	2	5	53	1	5	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	t0004	2573	47	14	10	20	1	2	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	t0005	2571	18	11	1	2	0	4	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	t0006	2574	13	13	0	0	0	0	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	t0007	2573	11	0	2	9	0	0	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	t0008	2568	10	9	1	0	0	0	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/1	t0009	2568	6	0	3	0	1	1	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	t0010	2576	6	4	1	0	0	1	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	t0011	2575	6	1	2	0	1	2	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	t0012	2577	5	0	0	5	0	0	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	1/0	t0013	2573	4	3	0	0	0	0	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	t0014	2573	4	3	1	0	0	0	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	t0015	2574	3	1	1	1	0	0	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	t0016	2573	3	3	0	0	0	0	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	t0017	2573	2	2	0	0	0	0	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	t0018	2571	2	0	0	2	0	0	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	t0019	2573	2	0	1	1	0	0	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	t0020	2573	2	0	0	2	0	0	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	t0021	2575	2	2	0	0	0	0	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	t0022	2573	1	1	0	0	0	0	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	t0023	2571	1	1	0	0	0	0	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	t0024	2571	1	1	0	0	0	0	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	t0025	2572	1	0	0	1	0	0	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	t0026	2571	1	1	0	0	0	0	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	t0027	2572	1	0	0	0	0	1	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	t0028	2576	1	1	0	0	0	0	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	t0029	2549	1	0	0	1	0	0	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	t0030	2574	1	0	1	0	0	0	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	t0031	2573	1	1	0	0	0	0	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	t0032	2573	1	1	0	0	0	0	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	t0033	2265	1	1	0	0	0	0	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	t0034	2573	1	0	0	1	0	0	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	t0035	2573	1	1	0	0	0	0	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	t0036	2573	1	1	0	0	0	0	copy fasta	PYROXD1	chr12	21432655	21476250