JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PYROXD1_chr12_21432655_21476250	0/0	t0037	2573	1	1	0	0	0	0	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	t0038	2573	1	1	0	0	0	0	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	t0039	2573	1	1	0	0	0	0	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	t0040	2576	1	0	1	0	0	0	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	t0041	2576	1	0	1	0	0	0	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	t0042	2574	1	0	0	1	0	0	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	t0043	2576	1	1	0	0	0	0	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	t0044	2576	1	0	1	0	0	0	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	t0045	2576	1	1	0	0	0	0	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD2_chr10_98378568_98420182	1/1	t0001	278	407	88	71	192	12	42	copy fasta	PYROXD2	chr10	98378568	98420182
PYROXD2_chr10_98378568_98420182	0/0	t0002	278	6	5	1	0	0	0	copy fasta	PYROXD2	chr10	98378568	98420182
PYROXD2_chr10_98378568_98420182	0/0	t0003	278	4	0	0	4	0	0	copy fasta	PYROXD2	chr10	98378568	98420182
PYROXD2_chr10_98378568_98420182	0/0	t0004	278	1	1	0	0	0	0	copy fasta	PYROXD2	chr10	98378568	98420182
PYURF_chr4_88515998_88528776	1/1	t0001	967	409	63	79	209	13	43	copy fasta	PYURF	chr4	88515998	88528776
PYURF_chr4_88515998_88528776	0/0	t0002	967	33	29	1	1	0	2	copy fasta	PYURF	chr4	88515998	88528776
PYURF_chr4_88515998_88528776	0/0	t0003	967	1	0	0	0	1	0	copy fasta	PYURF	chr4	88515998	88528776
PYURF_chr4_88515998_88528776	0/0	t0004	967	1	1	0	0	0	0	copy fasta	PYURF	chr4	88515998	88528776
PYURF_chr4_88515998_88528776	0/0	t0005	967	1	0	0	0	0	1	copy fasta	PYURF	chr4	88515998	88528776
PYURF_chr4_88515998_88528776	0/0	t0006	967	1	1	0	0	0	0	copy fasta	PYURF	chr4	88515998	88528776
PYY_chr17_43947733_43958940	1/1	t0001	315	230	76	53	60	14	25	copy fasta	PYY	chr17	43947733	43958940
PYY_chr17_43947733_43958940	0/0	t0002	315	131	17	15	88	2	9	copy fasta	PYY	chr17	43947733	43958940
PYY_chr17_43947733_43958940	0/0	t0003	315	2	0	0	2	0	0	copy fasta	PYY	chr17	43947733	43958940
PYY_chr17_43947733_43958940	0/0	t0004	315	1	1	0	0	0	0	copy fasta	PYY	chr17	43947733	43958940
PZP_chr12_9143840_9213395	1/1	t0001	187	334	88	64	132	14	34	copy fasta	PZP	chr12	9143840	9213395
QARS1_chr3_49090932_49109757	1/1	t0001	122	283	86	58	82	16	39	copy fasta	QARS1	chr3	49090932	49109757
QARS1_chr3_49090932_49109757	0/0	t0002	122	1	0	0	0	0	1	copy fasta	QARS1	chr3	49090932	49109757
QDPR_chr4_17481395_17517090	1/1	t0001	773	138	42	33	40	4	17	copy fasta	QDPR	chr4	17481395	17517090
QDPR_chr4_17481395_17517090	0/0	t0002	773	110	27	7	67	0	9	copy fasta	QDPR	chr4	17481395	17517090
QDPR_chr4_17481395_17517090	0/0	t0003	773	77	7	13	42	6	9	copy fasta	QDPR	chr4	17481395	17517090
QDPR_chr4_17481395_17517090	0/0	t0004	772	47	8	12	7	8	12	copy fasta	QDPR	chr4	17481395	17517090
QDPR_chr4_17481395_17517090	0/0	t0005	773	20	0	5	12	0	3	copy fasta	QDPR	chr4	17481395	17517090
QDPR_chr4_17481395_17517090	0/0	t0006	773	11	9	2	0	0	0	copy fasta	QDPR	chr4	17481395	17517090
QDPR_chr4_17481395_17517090	0/0	t0007	773	1	1	0	0	0	0	copy fasta	QDPR	chr4	17481395	17517090
QDPR_chr4_17481395_17517090	0/0	t0008	773	1	1	0	0	0	0	copy fasta	QDPR	chr4	17481395	17517090
QDPR_chr4_17481395_17517090	0/0	t0009	773	1	1	0	0	0	0	copy fasta	QDPR	chr4	17481395	17517090
QKI_chr6_163409718_163583592	0/1	t0001	8365	29	0	4	17	3	4	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0002	8366	16	1	1	12	0	2	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0003	8355	14	0	3	11	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0004	8353	11	1	0	9	1	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0005	8367	10	0	2	6	0	2	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0006	8356	10	0	2	8	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0007	8354	10	0	2	7	0	1	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0008	8360	8	0	7	0	0	1	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0009	8358	7	7	0	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0010	8348	7	0	3	2	0	2	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	1/0	t0011	8359	6	0	4	0	0	1	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0012	8362	6	4	1	0	0	1	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0013	8364	5	3	1	0	0	1	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0014	8361	5	0	3	0	0	2	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0015	8355	5	1	4	0	0	0	copy fasta	QKI	chr6	163409718	163583592