JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
QKI_chr6_163409718_163583592	0/0	t0016	8347	4	4	0	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0017	8344	4	3	1	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0018	8366	4	3	0	0	0	1	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0019	8365	4	0	0	2	0	2	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0020	8369	4	3	0	0	1	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0021	8359	4	1	0	0	0	3	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0022	8368	3	0	0	3	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0023	8368	3	3	0	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0024	8362	3	0	3	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0025	8365	3	0	3	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0026	8360	3	3	0	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0027	8360	3	2	1	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0028	8358	3	3	0	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0029	8357	3	3	0	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0030	8355	3	0	0	3	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0031	8346	2	1	1	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0032	8346	2	2	0	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0033	8343	2	2	0	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0034	8368	2	2	0	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0035	8361	2	2	0	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0036	8371	2	2	0	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0037	8370	2	2	0	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0038	8369	2	0	2	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0039	8367	2	1	0	0	0	1	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0040	8366	2	2	0	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0041	8367	2	2	0	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0042	8364	2	0	0	2	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0043	8363	2	2	0	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0044	8356	2	0	0	2	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0045	8358	2	0	0	2	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0046	8360	2	2	0	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0047	8358	2	2	0	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0048	8355	2	0	0	2	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0049	8354	2	0	0	2	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0050	8365	1	1	0	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0051	8362	1	1	0	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0052	8355	1	0	0	1	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0053	8369	1	1	0	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0054	8368	1	1	0	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0055	8370	1	0	0	1	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0056	8371	1	1	0	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0057	8367	1	1	0	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0058	8364	1	0	0	0	0	1	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0059	8364	1	0	0	0	0	1	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0060	8363	1	0	0	1	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0061	8360	1	0	0	0	0	1	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0062	8370	1	1	0	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0063	8361	1	1	0	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0064	8377	1	1	0	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0065	8376	1	1	0	0	0	0	copy fasta	QKI	chr6	163409718	163583592