JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
QKI_chr6_163409718_163583592	0/0	t0066	8374	1	1	0	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0067	8376	1	1	0	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0068	8375	1	1	0	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0069	8375	1	1	0	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0070	8371	1	1	0	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0071	8368	1	0	0	1	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0072	8368	1	0	0	0	0	1	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0073	8368	1	1	0	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0074	8367	1	0	0	1	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0075	8367	1	0	0	1	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0076	8367	1	0	0	0	0	1	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0077	8366	1	0	0	1	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0078	8366	1	0	0	1	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0079	8366	1	0	0	1	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0080	8366	1	0	0	1	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0081	8365	1	0	1	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0082	8365	1	0	0	0	1	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0083	8365	1	0	0	1	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0084	8365	1	0	0	1	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0085	8365	1	0	1	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0086	8370	1	0	1	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0087	8365	1	1	0	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0088	8359	1	1	0	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0089	8366	1	0	0	0	0	1	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0090	8364	1	0	0	0	0	1	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0091	8364	1	1	0	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0092	8364	1	0	0	0	1	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0093	8360	1	0	0	1	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0094	8354	1	1	0	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0095	8359	1	0	0	0	0	1	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0096	8360	1	1	0	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0097	8360	1	0	0	0	1	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0098	8359	1	0	1	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0099	8380	1	1	0	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0100	8365	1	0	0	1	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0101	8370	1	1	0	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0102	8362	1	1	0	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0103	8362	1	1	0	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0104	8358	1	0	0	1	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0105	8360	1	0	0	1	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0106	8355	1	1	0	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0107	8354	1	0	0	1	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0108	8354	1	0	0	1	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0109	8348	1	0	0	0	0	1	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0110	8350	1	0	0	0	0	1	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0111	8358	1	1	0	0	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0112	8354	1	0	0	1	0	0	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	t0113	8367	1	0	0	1	0	0	copy fasta	QKI	chr6	163409718	163583592
QNG1_chr9_83933311_83961742	1/1	t0001	1443	161	23	20	92	8	16	copy fasta	QNG1	chr9	83933311	83961742
QNG1_chr9_83933311_83961742	0/0	t0002	1442	102	32	18	38	3	11	copy fasta	QNG1	chr9	83933311	83961742