Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATRN_chr20_3466018_3656118	0/0	t0023	4368	1	0	0	0	0	1	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	t0024	4369	1	0	1	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	t0025	4368	1	0	1	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	t0026	4368	1	1	0	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	t0027	4368	1	1	0	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	t0028	4367	1	0	0	0	0	1	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	t0029	4367	1	0	1	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	t0030	4367	1	0	0	1	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	t0031	4368	1	1	0	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	t0032	4367	1	0	0	1	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	t0033	4368	1	1	0	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	t0034	4368	1	1	0	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	t0035	4367	1	1	0	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	t0036	4368	1	1	0	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	t0037	4368	1	1	0	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	t0038	4362	1	0	0	0	1	0	copy fasta	ATRN	chr20	3466018	3656118
ATRX_chrX_77499880_77791216	1/0	t0001	3687	76	14	16	25	8	12	copy fasta	ATRX	chrX	77499880	77791216
ATRX_chrX_77499880_77791216	0/1	t0002	3688	71	6	5	51	1	7	copy fasta	ATRX	chrX	77499880	77791216
ATRX_chrX_77499880_77791216	0/0	t0003	3686	22	12	3	2	1	4	copy fasta	ATRX	chrX	77499880	77791216
ATRX_chrX_77499880_77791216	0/0	t0004	3683	11	0	1	9	0	1	copy fasta	ATRX	chrX	77499880	77791216
ATRX_chrX_77499880_77791216	0/0	t0005	3686	10	10	0	0	0	0	copy fasta	ATRX	chrX	77499880	77791216
ATRX_chrX_77499880_77791216	0/0	t0006	3689	6	3	0	2	0	1	copy fasta	ATRX	chrX	77499880	77791216
ATRX_chrX_77499880_77791216	0/0	t0007	3685	4	4	0	0	0	0	copy fasta	ATRX	chrX	77499880	77791216
ATRX_chrX_77499880_77791216	0/0	t0008	3686	3	2	1	0	0	0	copy fasta	ATRX	chrX	77499880	77791216
ATRX_chrX_77499880_77791216	0/0	t0009	3687	2	0	2	0	0	0	copy fasta	ATRX	chrX	77499880	77791216
ATRX_chrX_77499880_77791216	0/0	t0010	3685	2	1	1	0	0	0	copy fasta	ATRX	chrX	77499880	77791216
ATRX_chrX_77499880_77791216	0/0	t0011	3687	1	0	0	0	0	1	copy fasta	ATRX	chrX	77499880	77791216
ATRX_chrX_77499880_77791216	0/0	t0012	3686	1	0	1	0	0	0	copy fasta	ATRX	chrX	77499880	77791216
ATRX_chrX_77499880_77791216	0/0	t0013	3687	1	0	1	0	0	0	copy fasta	ATRX	chrX	77499880	77791216
ATRX_chrX_77499880_77791216	0/0	t0014	3687	1	0	0	1	0	0	copy fasta	ATRX	chrX	77499880	77791216
ATRX_chrX_77499880_77791216	0/0	t0015	3687	1	0	0	1	0	0	copy fasta	ATRX	chrX	77499880	77791216
ATRX_chrX_77499880_77791216	0/0	t0016	3688	1	0	0	0	1	0	copy fasta	ATRX	chrX	77499880	77791216
ATRX_chrX_77499880_77791216	0/0	t0017	3685	1	0	0	1	0	0	copy fasta	ATRX	chrX	77499880	77791216
ATRX_chrX_77499880_77791216	0/0	t0018	3682	1	0	0	1	0	0	copy fasta	ATRX	chrX	77499880	77791216
ATRX_chrX_77499880_77791216	0/0	t0019	3681	1	0	1	0	0	0	copy fasta	ATRX	chrX	77499880	77791216
ATRX_chrX_77499880_77791216	0/0	t0020	3677	1	1	0	0	0	0	copy fasta	ATRX	chrX	77499880	77791216
ATRX_chrX_77499880_77791216	0/0	t0021	3687	1	1	0	0	0	0	copy fasta	ATRX	chrX	77499880	77791216
ATR_chr3_142444235_142583733	1/1	t0001	224	320	80	60	140	14	24	copy fasta	ATR	chr3	142444235	142583733
ATR_chr3_142444235_142583733	0/0	t0002	202	2	2	0	0	0	0	copy fasta	ATR	chr3	142444235	142583733
ATXN10_chr22_45666834_45850307	1/1	t0001	1867	252	61	34	125	6	24	copy fasta	ATXN10	chr22	45666834	45850307
ATXN10_chr22_45666834_45850307	0/0	t0002	1867	30	5	5	13	3	4	copy fasta	ATXN10	chr22	45666834	45850307
ATXN10_chr22_45666834_45850307	0/0	t0003	1867	9	3	5	0	1	0	copy fasta	ATXN10	chr22	45666834	45850307
ATXN10_chr22_45666834_45850307	0/0	t0004	1867	5	0	0	0	0	5	copy fasta	ATXN10	chr22	45666834	45850307
ATXN10_chr22_45666834_45850307	0/0	t0005	1867	3	3	0	0	0	0	copy fasta	ATXN10	chr22	45666834	45850307
ATXN10_chr22_45666834_45850307	0/0	t0006	1867	3	3	0	0	0	0	copy fasta	ATXN10	chr22	45666834	45850307
ATXN10_chr22_45666834_45850307	0/0	t0007	1867	2	0	0	2	0	0	copy fasta	ATXN10	chr22	45666834	45850307
ATXN10_chr22_45666834_45850307	0/0	t0008	1867	2	2	0	0	0	0	copy fasta	ATXN10	chr22	45666834	45850307
ATXN10_chr22_45666834_45850307	0/0	t0009	1867	1	1	0	0	0	0	copy fasta	ATXN10	chr22	45666834	45850307
ATXN10_chr22_45666834_45850307	0/0	t0010	1867	1	1	0	0	0	0	copy fasta	ATXN10	chr22	45666834	45850307
ATXN10_chr22_45666834_45850307	0/0	t0011	1867	1	1	0	0	0	0	copy fasta	ATXN10	chr22	45666834	45850307