JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
QNG1_chr9_83933311_83961742	0/0	t0003	1438	46	4	9	24	3	6	copy fasta	QNG1	chr9	83933311	83961742
QNG1_chr9_83933311_83961742	0/0	t0004	1444	13	0	0	12	0	1	copy fasta	QNG1	chr9	83933311	83961742
QNG1_chr9_83933311_83961742	0/0	t0005	1445	7	7	0	0	0	0	copy fasta	QNG1	chr9	83933311	83961742
QNG1_chr9_83933311_83961742	0/0	t0006	1442	6	0	3	2	0	1	copy fasta	QNG1	chr9	83933311	83961742
QNG1_chr9_83933311_83961742	0/0	t0007	1445	6	6	0	0	0	0	copy fasta	QNG1	chr9	83933311	83961742
QNG1_chr9_83933311_83961742	0/0	t0008	1444	6	1	1	3	0	1	copy fasta	QNG1	chr9	83933311	83961742
QNG1_chr9_83933311_83961742	0/0	t0009	1442	5	5	0	0	0	0	copy fasta	QNG1	chr9	83933311	83961742
QNG1_chr9_83933311_83961742	0/0	t0010	1443	4	0	1	0	2	1	copy fasta	QNG1	chr9	83933311	83961742
QNG1_chr9_83933311_83961742	0/0	t0011	1442	3	3	0	0	0	0	copy fasta	QNG1	chr9	83933311	83961742
QNG1_chr9_83933311_83961742	0/0	t0012	1442	3	2	1	0	0	0	copy fasta	QNG1	chr9	83933311	83961742
QNG1_chr9_83933311_83961742	0/0	t0013	1445	3	2	0	1	0	0	copy fasta	QNG1	chr9	83933311	83961742
QNG1_chr9_83933311_83961742	0/0	t0014	1443	2	2	0	0	0	0	copy fasta	QNG1	chr9	83933311	83961742
QNG1_chr9_83933311_83961742	0/0	t0015	1445	2	2	0	0	0	0	copy fasta	QNG1	chr9	83933311	83961742
QNG1_chr9_83933311_83961742	0/0	t0016	1437	2	0	1	0	0	1	copy fasta	QNG1	chr9	83933311	83961742
QNG1_chr9_83933311_83961742	0/0	t0017	1443	2	2	0	0	0	0	copy fasta	QNG1	chr9	83933311	83961742
QNG1_chr9_83933311_83961742	0/0	t0018	1442	2	0	1	1	0	0	copy fasta	QNG1	chr9	83933311	83961742
QNG1_chr9_83933311_83961742	0/0	t0019	1446	2	0	0	2	0	0	copy fasta	QNG1	chr9	83933311	83961742
QNG1_chr9_83933311_83961742	0/0	t0020	1442	1	0	0	0	0	1	copy fasta	QNG1	chr9	83933311	83961742
QNG1_chr9_83933311_83961742	0/0	t0021	1445	1	1	0	0	0	0	copy fasta	QNG1	chr9	83933311	83961742
QNG1_chr9_83933311_83961742	0/0	t0022	1443	1	0	0	0	0	1	copy fasta	QNG1	chr9	83933311	83961742
QNG1_chr9_83933311_83961742	0/0	t0023	1442	1	0	0	1	0	0	copy fasta	QNG1	chr9	83933311	83961742
QNG1_chr9_83933311_83961742	0/0	t0024	1442	1	0	0	0	0	1	copy fasta	QNG1	chr9	83933311	83961742
QNG1_chr9_83933311_83961742	0/0	t0025	1446	1	1	0	0	0	0	copy fasta	QNG1	chr9	83933311	83961742
QNG1_chr9_83933311_83961742	0/0	t0026	1448	1	1	0	0	0	0	copy fasta	QNG1	chr9	83933311	83961742
QNG1_chr9_83933311_83961742	0/0	t0027	1442	1	1	0	0	0	0	copy fasta	QNG1	chr9	83933311	83961742
QNG1_chr9_83933311_83961742	0/0	t0028	1443	1	0	0	1	0	0	copy fasta	QNG1	chr9	83933311	83961742
QNG1_chr9_83933311_83961742	0/0	t0029	1443	1	0	1	0	0	0	copy fasta	QNG1	chr9	83933311	83961742
QNG1_chr9_83933311_83961742	0/0	t0030	1443	1	0	0	1	0	0	copy fasta	QNG1	chr9	83933311	83961742
QNG1_chr9_83933311_83961742	0/0	t0031	1443	1	0	0	1	0	0	copy fasta	QNG1	chr9	83933311	83961742
QNG1_chr9_83933311_83961742	0/0	t0032	1443	1	1	0	0	0	0	copy fasta	QNG1	chr9	83933311	83961742
QNG1_chr9_83933311_83961742	0/0	t0033	1443	1	0	0	1	0	0	copy fasta	QNG1	chr9	83933311	83961742
QNG1_chr9_83933311_83961742	0/0	t0034	1443	1	0	0	1	0	0	copy fasta	QNG1	chr9	83933311	83961742
QNG1_chr9_83933311_83961742	0/0	t0035	1443	1	0	0	1	0	0	copy fasta	QNG1	chr9	83933311	83961742
QNG1_chr9_83933311_83961742	0/0	t0036	1443	1	0	0	0	0	1	copy fasta	QNG1	chr9	83933311	83961742
QPCTL_chr19_45687666_45708987	1/1	t0001	977	284	54	54	141	7	26	copy fasta	QPCTL	chr19	45687666	45708987
QPCTL_chr19_45687666_45708987	0/0	t0002	978	94	19	19	39	3	14	copy fasta	QPCTL	chr19	45687666	45708987
QPCTL_chr19_45687666_45708987	0/0	t0003	981	34	1	4	24	3	2	copy fasta	QPCTL	chr19	45687666	45708987
QPCTL_chr19_45687666_45708987	0/0	t0004	981	22	12	5	0	1	4	copy fasta	QPCTL	chr19	45687666	45708987
QPCTL_chr19_45687666_45708987	0/0	t0005	976	6	6	0	0	0	0	copy fasta	QPCTL	chr19	45687666	45708987
QPCTL_chr19_45687666_45708987	0/0	t0006	977	2	0	2	0	0	0	copy fasta	QPCTL	chr19	45687666	45708987
QPCTL_chr19_45687666_45708987	0/0	t0007	976	1	0	0	1	0	0	copy fasta	QPCTL	chr19	45687666	45708987
QPCTL_chr19_45687666_45708987	0/0	t0008	977	1	0	0	1	0	0	copy fasta	QPCTL	chr19	45687666	45708987
QPCTL_chr19_45687666_45708987	0/0	t0009	978	1	1	0	0	0	0	copy fasta	QPCTL	chr19	45687666	45708987
QPCTL_chr19_45687666_45708987	0/0	t0010	977	1	1	0	0	0	0	copy fasta	QPCTL	chr19	45687666	45708987
QPCT_chr2_37339630_37378322	0/1	t0001	598	300	75	63	116	10	35	copy fasta	QPCT	chr2	37339630	37378322
QPCT_chr2_37339630_37378322	0/0	t0002	598	119	9	15	92	2	1	copy fasta	QPCT	chr2	37339630	37378322
QPCT_chr2_37339630_37378322	0/0	t0003	596	9	9	0	0	0	0	copy fasta	QPCT	chr2	37339630	37378322
QPCT_chr2_37339630_37378322	1/0	t0004	598	6	0	1	0	0	4	copy fasta	QPCT	chr2	37339630	37378322
QPCT_chr2_37339630_37378322	0/0	t0005	598	5	1	1	0	2	1	copy fasta	QPCT	chr2	37339630	37378322
QPCT_chr2_37339630_37378322	0/0	t0006	598	1	0	0	1	0	0	copy fasta	QPCT	chr2	37339630	37378322