JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
QPCT_chr2_37339630_37378322	0/0	t0007	598	1	0	0	0	0	1	copy fasta	QPCT	chr2	37339630	37378322
QPCT_chr2_37339630_37378322	0/0	t0008	598	1	0	0	1	0	0	copy fasta	QPCT	chr2	37339630	37378322
QPRT_chr16_29674180_29703699	1/0	t0001	1307	275	80	50	99	11	34	copy fasta	QPRT	chr16	29674180	29703699
QPRT_chr16_29674180_29703699	0/1	t0002	1307	33	3	13	8	3	5	copy fasta	QPRT	chr16	29674180	29703699
QPRT_chr16_29674180_29703699	0/0	t0003	1307	3	0	3	0	0	0	copy fasta	QPRT	chr16	29674180	29703699
QPRT_chr16_29674180_29703699	0/0	t0004	1311	3	0	0	0	0	3	copy fasta	QPRT	chr16	29674180	29703699
QPRT_chr16_29674180_29703699	0/0	t0005	1307	2	0	2	0	0	0	copy fasta	QPRT	chr16	29674180	29703699
QPRT_chr16_29674180_29703699	0/0	t0006	1307	2	0	0	2	0	0	copy fasta	QPRT	chr16	29674180	29703699
QPRT_chr16_29674180_29703699	0/0	t0007	1307	1	0	0	1	0	0	copy fasta	QPRT	chr16	29674180	29703699
QPRT_chr16_29674180_29703699	0/0	t0008	1307	1	1	0	0	0	0	copy fasta	QPRT	chr16	29674180	29703699
QRFPR_chr4_121323642_121386018	0/0	t0001	1044	121	11	25	68	0	17	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/0	t0002	1044	72	18	16	24	8	6	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	1/0	t0003	1044	40	22	9	0	5	3	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/1	t0004	1044	30	5	9	8	1	6	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/0	t0005	1044	20	5	2	13	0	0	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/0	t0006	1044	20	1	1	17	0	1	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/0	t0007	1044	12	11	1	0	0	0	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/0	t0008	1044	12	0	5	7	0	0	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/0	t0009	1044	11	1	0	10	0	0	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/0	t0010	1044	8	0	2	0	0	6	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/0	t0011	1044	6	1	4	0	0	1	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/0	t0012	1044	4	2	1	1	0	0	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/0	t0013	1044	4	4	0	0	0	0	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/0	t0014	1044	4	3	1	0	0	0	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/0	t0015	1044	4	3	1	0	0	0	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/0	t0016	1044	3	3	0	0	0	0	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/0	t0017	1044	2	2	0	0	0	0	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/0	t0018	1044	2	0	0	0	0	2	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/0	t0019	1044	2	0	0	2	0	0	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/0	t0020	1044	1	0	0	1	0	0	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/0	t0021	1044	1	0	0	1	0	0	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/0	t0022	1044	1	1	0	0	0	0	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/0	t0023	1044	1	0	1	0	0	0	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/0	t0024	1044	1	1	0	0	0	0	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/0	t0025	1044	1	0	1	0	0	0	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/0	t0026	1044	1	0	1	0	0	0	copy fasta	QRFPR	chr4	121323642	121386018
QRFP_chr9_130887707_130901812	1/0	t0001	1243	154	18	25	79	7	24	copy fasta	QRFP	chr9	130887707	130901812
QRFP_chr9_130887707_130901812	0/0	t0002	1243	109	5	20	76	3	5	copy fasta	QRFP	chr9	130887707	130901812
QRFP_chr9_130887707_130901812	0/1	t0003	1242	57	22	24	4	2	4	copy fasta	QRFP	chr9	130887707	130901812
QRFP_chr9_130887707_130901812	0/0	t0004	1243	21	0	1	16	0	4	copy fasta	QRFP	chr9	130887707	130901812
QRFP_chr9_130887707_130901812	0/0	t0005	1242	21	18	1	0	0	2	copy fasta	QRFP	chr9	130887707	130901812
QRFP_chr9_130887707_130901812	0/0	t0006	1242	13	0	1	11	0	1	copy fasta	QRFP	chr9	130887707	130901812
QRFP_chr9_130887707_130901812	0/0	t0007	1243	11	5	5	0	0	1	copy fasta	QRFP	chr9	130887707	130901812
QRFP_chr9_130887707_130901812	0/0	t0008	1242	7	7	0	0	0	0	copy fasta	QRFP	chr9	130887707	130901812
QRFP_chr9_130887707_130901812	0/0	t0009	1242	6	6	0	0	0	0	copy fasta	QRFP	chr9	130887707	130901812
QRFP_chr9_130887707_130901812	0/0	t0010	1243	3	0	0	3	0	0	copy fasta	QRFP	chr9	130887707	130901812
QRFP_chr9_130887707_130901812	0/0	t0011	1243	2	2	0	0	0	0	copy fasta	QRFP	chr9	130887707	130901812
QRFP_chr9_130887707_130901812	0/0	t0012	1243	2	0	0	0	0	2	copy fasta	QRFP	chr9	130887707	130901812
QRFP_chr9_130887707_130901812	0/0	t0013	1242	2	2	0	0	0	0	copy fasta	QRFP	chr9	130887707	130901812
QRFP_chr9_130887707_130901812	0/0	t0014	1243	2	1	1	0	0	0	copy fasta	QRFP	chr9	130887707	130901812