JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
QRFP_chr9_130887707_130901812	0/0	t0015	1243	2	2	0	0	0	0	copy fasta	QRFP	chr9	130887707	130901812
QRFP_chr9_130887707_130901812	0/0	t0016	1243	2	0	0	2	0	0	copy fasta	QRFP	chr9	130887707	130901812
QRFP_chr9_130887707_130901812	0/0	t0017	1242	1	1	0	0	0	0	copy fasta	QRFP	chr9	130887707	130901812
QRFP_chr9_130887707_130901812	0/0	t0018	1243	1	1	0	0	0	0	copy fasta	QRFP	chr9	130887707	130901812
QRFP_chr9_130887707_130901812	0/0	t0019	1242	1	0	1	0	0	0	copy fasta	QRFP	chr9	130887707	130901812
QRFP_chr9_130887707_130901812	0/0	t0020	1242	1	1	0	0	0	0	copy fasta	QRFP	chr9	130887707	130901812
QRFP_chr9_130887707_130901812	0/0	t0021	1243	1	0	0	0	0	1	copy fasta	QRFP	chr9	130887707	130901812
QRFP_chr9_130887707_130901812	0/0	t0022	1242	1	1	0	0	0	0	copy fasta	QRFP	chr9	130887707	130901812
QRFP_chr9_130887707_130901812	0/0	t0023	1243	1	1	0	0	0	0	copy fasta	QRFP	chr9	130887707	130901812
QRFP_chr9_130887707_130901812	0/0	t0024	1243	1	1	0	0	0	0	copy fasta	QRFP	chr9	130887707	130901812
QRFP_chr9_130887707_130901812	0/0	t0025	1242	1	1	0	0	0	0	copy fasta	QRFP	chr9	130887707	130901812
QRFP_chr9_130887707_130901812	0/0	t0026	1242	1	1	0	0	0	0	copy fasta	QRFP	chr9	130887707	130901812
QRFP_chr9_130887707_130901812	0/0	t0027	1243	1	1	0	0	0	0	copy fasta	QRFP	chr9	130887707	130901812
QRFP_chr9_130887707_130901812	0/0	t0028	1243	1	0	1	0	0	0	copy fasta	QRFP	chr9	130887707	130901812
QRFP_chr9_130887707_130901812	0/0	t0029	1243	1	0	0	1	0	0	copy fasta	QRFP	chr9	130887707	130901812
QRFP_chr9_130887707_130901812	0/0	t0030	1261	1	1	0	0	0	0	copy fasta	QRFP	chr9	130887707	130901812
QRICH1_chr3_49024707_49099071	1/1	t0001	927	211	72	44	54	14	25	copy fasta	QRICH1	chr3	49024707	49099071
QRICH1_chr3_49024707_49099071	0/0	t0002	928	5	4	1	0	0	0	copy fasta	QRICH1	chr3	49024707	49099071
QRICH1_chr3_49024707_49099071	0/0	t0003	930	3	2	0	1	0	0	copy fasta	QRICH1	chr3	49024707	49099071
QRICH1_chr3_49024707_49099071	0/0	t0004	927	3	0	0	3	0	0	copy fasta	QRICH1	chr3	49024707	49099071
QRICH1_chr3_49024707_49099071	0/0	t0005	927	1	0	0	0	0	1	copy fasta	QRICH1	chr3	49024707	49099071
QRICH1_chr3_49024707_49099071	0/0	t0006	927	1	0	0	1	0	0	copy fasta	QRICH1	chr3	49024707	49099071
QRICH1_chr3_49024707_49099071	0/0	t0007	927	1	0	0	1	0	0	copy fasta	QRICH1	chr3	49024707	49099071
QRICH1_chr3_49024707_49099071	0/0	t0008	927	1	0	1	0	0	0	copy fasta	QRICH1	chr3	49024707	49099071
QRICH2_chr17_76269049_76313276	1/1	t0001	309	306	57	64	131	8	44	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	t0002	318	35	15	4	16	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	t0003	318	13	13	0	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	t0004	309	5	0	0	5	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	t0005	318	5	5	0	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRSL1_chr6_106624578_106673417	1/0	t0001	2520	135	34	30	48	5	17	copy fasta	QRSL1	chr6	106624578	106673417
QRSL1_chr6_106624578_106673417	0/0	t0002	2517	67	15	1	49	0	2	copy fasta	QRSL1	chr6	106624578	106673417
QRSL1_chr6_106624578_106673417	0/0	t0003	2520	55	13	8	34	0	0	copy fasta	QRSL1	chr6	106624578	106673417
QRSL1_chr6_106624578_106673417	0/1	t0004	2517	54	4	16	20	5	8	copy fasta	QRSL1	chr6	106624578	106673417
QRSL1_chr6_106624578_106673417	0/0	t0005	2520	43	0	7	36	0	0	copy fasta	QRSL1	chr6	106624578	106673417
QRSL1_chr6_106624578_106673417	0/0	t0006	2519	23	1	6	12	2	2	copy fasta	QRSL1	chr6	106624578	106673417
QRSL1_chr6_106624578_106673417	0/0	t0007	2520	9	0	1	2	1	5	copy fasta	QRSL1	chr6	106624578	106673417
QRSL1_chr6_106624578_106673417	0/0	t0008	2517	9	7	1	0	1	0	copy fasta	QRSL1	chr6	106624578	106673417
QRSL1_chr6_106624578_106673417	0/0	t0009	2517	4	3	0	1	0	0	copy fasta	QRSL1	chr6	106624578	106673417
QRSL1_chr6_106624578_106673417	0/0	t0010	2520	4	4	0	0	0	0	copy fasta	QRSL1	chr6	106624578	106673417
QRSL1_chr6_106624578_106673417	0/0	t0011	2517	3	3	0	0	0	0	copy fasta	QRSL1	chr6	106624578	106673417
QRSL1_chr6_106624578_106673417	0/0	t0012	2517	2	2	0	0	0	0	copy fasta	QRSL1	chr6	106624578	106673417
QRSL1_chr6_106624578_106673417	0/0	t0013	2519	2	1	0	1	0	0	copy fasta	QRSL1	chr6	106624578	106673417
QRSL1_chr6_106624578_106673417	0/0	t0014	2520	2	0	2	0	0	0	copy fasta	QRSL1	chr6	106624578	106673417
QRSL1_chr6_106624578_106673417	0/0	t0015	2517	1	0	1	0	0	0	copy fasta	QRSL1	chr6	106624578	106673417
QRSL1_chr6_106624578_106673417	0/0	t0016	2520	1	1	0	0	0	0	copy fasta	QRSL1	chr6	106624578	106673417
QRSL1_chr6_106624578_106673417	0/0	t0017	2519	1	1	0	0	0	0	copy fasta	QRSL1	chr6	106624578	106673417
QRSL1_chr6_106624578_106673417	0/0	t0018	2520	1	0	0	1	0	0	copy fasta	QRSL1	chr6	106624578	106673417
QRSL1_chr6_106624578_106673417	0/0	t0019	2520	1	1	0	0	0	0	copy fasta	QRSL1	chr6	106624578	106673417
QRSL1_chr6_106624578_106673417	0/0	t0020	2517	1	0	0	1	0	0	copy fasta	QRSL1	chr6	106624578	106673417
QRSL1_chr6_106624578_106673417	0/0	t0021	2520	1	0	0	1	0	0	copy fasta	QRSL1	chr6	106624578	106673417