JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
QRSL1_chr6_106624578_106673417	0/0	t0022	2520	1	0	1	0	0	0	copy fasta	QRSL1	chr6	106624578	106673417
QRSL1_chr6_106624578_106673417	0/0	t0023	2519	1	0	0	1	0	0	copy fasta	QRSL1	chr6	106624578	106673417
QRSL1_chr6_106624578_106673417	0/0	t0024	2520	1	0	0	1	0	0	copy fasta	QRSL1	chr6	106624578	106673417
QSER1_chr11_32887811_32985270	0/1	t0001	4118	156	61	25	40	6	23	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	1/0	t0002	4112	18	2	5	5	3	2	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	t0003	4118	8	0	0	7	0	1	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	t0004	4118	8	6	2	0	0	0	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	t0005	4124	5	1	1	0	1	2	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	t0006	4115	5	5	0	0	0	0	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	t0007	4121	4	3	1	0	0	0	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	t0008	4121	4	4	0	0	0	0	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	t0009	4124	3	0	3	0	0	0	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	t0010	4118	3	0	3	0	0	0	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	t0011	4118	3	0	3	0	0	0	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	t0012	4118	3	0	1	2	0	0	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	t0013	4124	2	2	0	0	0	0	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	t0014	4118	2	0	0	2	0	0	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	t0015	4118	2	0	2	0	0	0	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	t0016	4118	2	0	2	0	0	0	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	t0017	4127	1	1	0	0	0	0	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	t0018	4121	1	1	0	0	0	0	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	t0019	4118	1	1	0	0	0	0	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	t0020	4118	1	0	0	0	0	1	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	t0021	4118	1	1	0	0	0	0	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	t0022	4118	1	1	0	0	0	0	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	t0023	4118	1	1	0	0	0	0	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	t0024	4112	1	0	0	0	0	1	copy fasta	QSER1	chr11	32887811	32985270
QSOX1_chr1_180149869_180209030	0/1	t0001	7036	99	0	18	60	6	14	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0002	7033	52	5	6	32	1	8	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0003	7035	37	0	1	35	1	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0004	7033	28	21	3	0	2	2	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0005	7033	18	3	6	8	0	1	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0006	7037	16	1	7	5	0	3	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0007	7033	15	0	9	0	3	3	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0008	7035	10	2	2	5	0	1	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0009	7034	8	7	1	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0010	7036	7	0	0	7	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0011	7033	7	0	0	7	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0012	7034	6	5	1	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0013	7035	5	1	4	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0014	7030	4	4	0	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0015	7035	3	3	0	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0016	7035	3	2	1	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0017	7034	3	3	0	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0018	7031	3	3	0	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0019	7034	3	3	0	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0020	7033	3	0	0	0	0	3	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0021	7033	3	1	0	0	0	2	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0022	7035	2	2	0	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0023	7036	2	0	0	2	0	0	copy fasta	QSOX1	chr1	180149869	180209030