JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
QSOX1_chr1_180149869_180209030	0/0	t0024	7033	2	0	1	0	0	1	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0025	7032	2	2	0	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0026	7033	2	0	0	2	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0027	7031	2	2	0	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0028	7033	2	0	0	0	1	1	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0029	7036	2	0	0	2	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0030	7033	2	0	0	2	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0031	7033	2	2	0	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0032	7033	2	2	0	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0033	7034	2	1	0	0	1	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0034	7049	1	1	0	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0035	7035	1	1	0	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0036	7033	1	1	0	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0037	7035	1	1	0	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0038	7035	1	0	0	1	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0039	7033	1	0	0	0	1	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	1/0	t0040	7033	1	0	0	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0041	7036	1	0	0	0	0	1	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0042	7036	1	0	0	0	1	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0043	7036	1	0	0	1	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0044	7034	1	1	0	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0045	7036	1	0	0	1	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0046	7035	1	1	0	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0047	7033	1	1	0	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0048	7036	1	0	0	0	1	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0049	7034	1	0	1	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0050	7035	1	0	1	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0051	7033	1	0	0	1	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0052	7034	1	1	0	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0053	7033	1	1	0	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0054	7032	1	0	1	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0055	7033	1	1	0	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0056	7034	1	1	0	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0057	7031	1	1	0	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0058	7033	1	0	0	0	0	1	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0059	7037	1	0	0	1	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0060	7033	1	1	0	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0061	7033	1	0	1	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0062	7033	1	0	0	0	0	1	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0063	7034	1	1	0	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	t0064	7031	1	1	0	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX2_chr9_136201333_136250812	0/0	t0001	2430	62	9	15	26	1	11	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	t0002	2436	46	1	4	33	3	5	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	t0003	2429	29	1	9	11	3	5	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	t0004	2429	25	1	11	11	0	2	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	t0005	2431	18	1	0	15	1	1	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	t0006	2431	15	0	1	8	1	5	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	t0007	2431	12	11	1	0	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	t0008	2435	9	5	2	0	0	2	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	t0009	2430	9	0	0	9	0	0	copy fasta	QSOX2	chr9	136201333	136250812