JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
QSOX2_chr9_136201333_136250812	0/0	t0060	2438	1	0	1	0	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	t0061	2432	1	0	0	1	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	t0062	2434	1	0	0	1	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	t0063	2440	1	1	0	0	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	t0064	2429	1	0	0	1	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	t0065	2427	1	0	0	0	0	1	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	t0066	2433	1	1	0	0	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	t0067	2435	1	1	0	0	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	t0068	2439	1	1	0	0	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	t0069	2441	1	1	0	0	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	t0070	2429	1	0	0	1	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	t0071	2430	1	1	0	0	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	t0072	2424	1	0	0	1	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	t0073	2430	1	0	0	1	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	t0074	2430	1	0	0	1	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	t0075	2429	1	1	0	0	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	t0076	2430	1	0	0	1	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	t0077	2430	1	0	0	0	0	1	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	t0078	2432	1	0	0	1	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	t0079	2432	1	0	0	1	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	t0080	2436	1	0	0	1	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	t0081	2431	1	1	0	0	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	t0082	2429	1	0	0	1	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/1	t0083	2430	1	0	0	0	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	t0084	2431	1	0	0	1	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	t0085	2431	1	0	0	0	1	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	t0086	2433	1	0	0	0	0	1	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	t0087	2441	1	0	0	1	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	t0088	2431	1	0	1	0	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	t0089	2430	1	1	0	0	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	t0090	2430	1	1	0	0	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	t0091	2430	1	1	0	0	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	t0092	2427	1	1	0	0	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	t0093	2420	1	1	0	0	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	t0094	2434	1	1	0	0	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	t0095	2434	1	1	0	0	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	t0096	2446	1	0	0	1	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	t0097	2436	1	0	0	1	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	t0098	2435	1	0	1	0	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	t0099	2441	1	0	0	1	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	t0100	2438	1	1	0	0	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	t0101	2419	1	0	0	1	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QTRT1_chr19_10696439_10718365	1/1	t0001	118	403	83	72	188	16	42	copy fasta	QTRT1	chr19	10696439	10718365
QTRT1_chr19_10696439_10718365	0/0	t0002	118	1	1	0	0	0	0	copy fasta	QTRT1	chr19	10696439	10718365
QTRT2_chr3_114051737_114093422	1/1	t0001	2776	172	24	36	82	7	21	copy fasta	QTRT2	chr3	114051737	114093422
QTRT2_chr3_114051737_114093422	0/0	t0002	2776	135	23	26	61	6	19	copy fasta	QTRT2	chr3	114051737	114093422
QTRT2_chr3_114051737_114093422	0/0	t0003	2776	26	3	10	10	0	3	copy fasta	QTRT2	chr3	114051737	114093422
QTRT2_chr3_114051737_114093422	0/0	t0004	2776	21	4	2	13	0	2	copy fasta	QTRT2	chr3	114051737	114093422
QTRT2_chr3_114051737_114093422	0/0	t0005	2776	21	0	3	18	0	0	copy fasta	QTRT2	chr3	114051737	114093422
QTRT2_chr3_114051737_114093422	0/0	t0006	2776	16	16	0	0	0	0	copy fasta	QTRT2	chr3	114051737	114093422