JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
QTRT2_chr3_114051737_114093422	0/0	t0007	2776	10	9	1	0	0	0	copy fasta	QTRT2	chr3	114051737	114093422
QTRT2_chr3_114051737_114093422	0/0	t0008	2776	4	4	0	0	0	0	copy fasta	QTRT2	chr3	114051737	114093422
QTRT2_chr3_114051737_114093422	0/0	t0009	2776	3	1	1	0	1	0	copy fasta	QTRT2	chr3	114051737	114093422
QTRT2_chr3_114051737_114093422	0/0	t0010	2776	3	0	0	3	0	0	copy fasta	QTRT2	chr3	114051737	114093422
QTRT2_chr3_114051737_114093422	0/0	t0011	2776	2	0	0	2	0	0	copy fasta	QTRT2	chr3	114051737	114093422
QTRT2_chr3_114051737_114093422	0/0	t0012	2776	2	2	0	0	0	0	copy fasta	QTRT2	chr3	114051737	114093422
QTRT2_chr3_114051737_114093422	0/0	t0013	2776	2	0	0	0	2	0	copy fasta	QTRT2	chr3	114051737	114093422
QTRT2_chr3_114051737_114093422	0/0	t0014	2776	2	2	0	0	0	0	copy fasta	QTRT2	chr3	114051737	114093422
QTRT2_chr3_114051737_114093422	0/0	t0015	2776	1	0	0	1	0	0	copy fasta	QTRT2	chr3	114051737	114093422
QTRT2_chr3_114051737_114093422	0/0	t0016	2776	1	0	0	1	0	0	copy fasta	QTRT2	chr3	114051737	114093422
QTRT2_chr3_114051737_114093422	0/0	t0017	2776	1	0	1	0	0	0	copy fasta	QTRT2	chr3	114051737	114093422
QTRT2_chr3_114051737_114093422	0/0	t0018	2776	1	1	0	0	0	0	copy fasta	QTRT2	chr3	114051737	114093422
QTRT2_chr3_114051737_114093422	0/0	t0019	2776	1	0	0	1	0	0	copy fasta	QTRT2	chr3	114051737	114093422
QTRT2_chr3_114051737_114093422	0/0	t0020	2776	1	1	0	0	0	0	copy fasta	QTRT2	chr3	114051737	114093422
QTRT2_chr3_114051737_114093422	0/0	t0021	2765	1	1	0	0	0	0	copy fasta	QTRT2	chr3	114051737	114093422
QTRT2_chr3_114051737_114093422	0/0	t0022	2776	1	1	0	0	0	0	copy fasta	QTRT2	chr3	114051737	114093422
QTRT2_chr3_114051737_114093422	0/0	t0023	2776	1	1	0	0	0	0	copy fasta	QTRT2	chr3	114051737	114093422
QTRT2_chr3_114051737_114093422	0/0	t0024	2776	1	1	0	0	0	0	copy fasta	QTRT2	chr3	114051737	114093422
QTRT2_chr3_114051737_114093422	0/0	t0025	2776	1	0	0	0	0	1	copy fasta	QTRT2	chr3	114051737	114093422
R3HCC1L_chr10_98129657_98249897	0/0	t0001	1057	167	23	28	86	6	24	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	1/1	t0002	1057	137	25	23	70	5	12	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	t0003	1057	40	9	12	7	7	5	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	t0004	1057	20	20	0	0	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	t0005	1057	7	7	0	0	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	t0006	1056	5	5	0	0	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	t0007	1057	3	3	0	0	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	t0008	1057	2	0	0	2	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	t0009	1057	1	0	0	1	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	t0010	1057	1	1	0	0	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	t0011	1057	1	0	0	1	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	t0012	1057	1	0	1	0	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	t0013	1057	1	1	0	0	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	t0014	1057	1	0	0	0	0	1	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	t0015	1057	1	0	0	1	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1_chr8_23283108_23301279	1/1	t0001	251	464	98	81	217	18	48	copy fasta	R3HCC1	chr8	23283108	23301279
R3HCC1_chr8_23283108_23301279	0/0	t0002	251	2	0	1	0	0	1	copy fasta	R3HCC1	chr8	23283108	23301279
R3HCC1_chr8_23283108_23301279	0/0	t0003	251	2	2	0	0	0	0	copy fasta	R3HCC1	chr8	23283108	23301279
R3HCC1_chr8_23283108_23301279	0/0	t0004	251	1	0	0	1	0	0	copy fasta	R3HCC1	chr8	23283108	23301279
R3HCC1_chr8_23283108_23301279	0/0	t0005	251	1	0	0	1	0	0	copy fasta	R3HCC1	chr8	23283108	23301279
R3HCC1_chr8_23283108_23301279	0/0	t0006	251	1	0	0	1	0	0	copy fasta	R3HCC1	chr8	23283108	23301279
R3HCC1_chr8_23283108_23301279	0/0	t0007	251	1	0	0	0	0	1	copy fasta	R3HCC1	chr8	23283108	23301279
R3HDM1_chr2_135526484_135730269	1/1	t0001	1377	209	76	32	74	0	25	copy fasta	R3HDM1	chr2	135526484	135730269
R3HDM1_chr2_135526484_135730269	0/0	t0002	1377	8	0	1	7	0	0	copy fasta	R3HDM1	chr2	135526484	135730269
R3HDM1_chr2_135526484_135730269	0/0	t0003	1410	6	0	4	2	0	0	copy fasta	R3HDM1	chr2	135526484	135730269
R3HDM1_chr2_135526484_135730269	0/0	t0004	1374	5	0	0	5	0	0	copy fasta	R3HDM1	chr2	135526484	135730269
R3HDM1_chr2_135526484_135730269	0/0	t0005	1377	1	1	0	0	0	0	copy fasta	R3HDM1	chr2	135526484	135730269
R3HDM1_chr2_135526484_135730269	0/0	t0006	1377	1	1	0	0	0	0	copy fasta	R3HDM1	chr2	135526484	135730269
R3HDM1_chr2_135526484_135730269	0/0	t0007	1377	1	0	0	0	0	1	copy fasta	R3HDM1	chr2	135526484	135730269
R3HDM1_chr2_135526484_135730269	0/0	t0008	1377	1	0	1	0	0	0	copy fasta	R3HDM1	chr2	135526484	135730269
R3HDM2_chr12_57248764_57436043	1/1	t0001	1439	159	36	22	75	5	19	copy fasta	R3HDM2	chr12	57248764	57436043