JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
R3HDM2_chr12_57248764_57436043	0/0	t0002	1438	157	41	27	65	5	19	copy fasta	R3HDM2	chr12	57248764	57436043
R3HDM2_chr12_57248764_57436043	0/0	t0003	1440	6	1	0	5	0	0	copy fasta	R3HDM2	chr12	57248764	57436043
R3HDM2_chr12_57248764_57436043	0/0	t0004	1439	5	5	0	0	0	0	copy fasta	R3HDM2	chr12	57248764	57436043
R3HDM2_chr12_57248764_57436043	0/0	t0005	1438	3	0	1	0	0	2	copy fasta	R3HDM2	chr12	57248764	57436043
R3HDM2_chr12_57248764_57436043	0/0	t0006	1439	2	2	0	0	0	0	copy fasta	R3HDM2	chr12	57248764	57436043
R3HDM2_chr12_57248764_57436043	0/0	t0007	1438	1	1	0	0	0	0	copy fasta	R3HDM2	chr12	57248764	57436043
R3HDM2_chr12_57248764_57436043	0/0	t0008	1438	1	1	0	0	0	0	copy fasta	R3HDM2	chr12	57248764	57436043
R3HDM2_chr12_57248764_57436043	0/0	t0009	1438	1	1	0	0	0	0	copy fasta	R3HDM2	chr12	57248764	57436043
R3HDM2_chr12_57248764_57436043	0/0	t0010	1439	1	0	0	1	0	0	copy fasta	R3HDM2	chr12	57248764	57436043
R3HDM4_chr19_891503_918219	1/0	t0001	997	227	60	48	86	10	22	copy fasta	R3HDM4	chr19	891503	918219
R3HDM4_chr19_891503_918219	0/0	t0002	997	104	14	14	71	1	4	copy fasta	R3HDM4	chr19	891503	918219
R3HDM4_chr19_891503_918219	0/1	t0003	997	49	7	11	3	7	20	copy fasta	R3HDM4	chr19	891503	918219
R3HDM4_chr19_891503_918219	0/0	t0004	997	32	5	6	19	0	2	copy fasta	R3HDM4	chr19	891503	918219
R3HDM4_chr19_891503_918219	0/0	t0005	997	4	1	3	0	0	0	copy fasta	R3HDM4	chr19	891503	918219
R3HDM4_chr19_891503_918219	0/0	t0006	991	3	3	0	0	0	0	copy fasta	R3HDM4	chr19	891503	918219
R3HDM4_chr19_891503_918219	0/0	t0007	997	2	2	0	0	0	0	copy fasta	R3HDM4	chr19	891503	918219
R3HDM4_chr19_891503_918219	0/0	t0008	997	2	2	0	0	0	0	copy fasta	R3HDM4	chr19	891503	918219
R3HDM4_chr19_891503_918219	0/0	t0009	997	1	0	1	0	0	0	copy fasta	R3HDM4	chr19	891503	918219
R3HDM4_chr19_891503_918219	0/0	t0010	997	1	1	0	0	0	0	copy fasta	R3HDM4	chr19	891503	918219
R3HDM4_chr19_891503_918219	0/0	t0011	997	1	1	0	0	0	0	copy fasta	R3HDM4	chr19	891503	918219
R3HDM4_chr19_891503_918219	0/0	t0012	997	1	1	0	0	0	0	copy fasta	R3HDM4	chr19	891503	918219
R3HDM4_chr19_891503_918219	0/0	t0013	997	1	0	1	0	0	0	copy fasta	R3HDM4	chr19	891503	918219
R3HDM4_chr19_891503_918219	0/0	t0014	997	1	0	1	0	0	0	copy fasta	R3HDM4	chr19	891503	918219
R3HDM4_chr19_891503_918219	0/0	t0015	997	1	0	1	0	0	0	copy fasta	R3HDM4	chr19	891503	918219
R3HDM4_chr19_891503_918219	0/0	t0016	997	1	1	0	0	0	0	copy fasta	R3HDM4	chr19	891503	918219
R3HDM4_chr19_891503_918219	0/0	t0017	997	1	0	0	1	0	0	copy fasta	R3HDM4	chr19	891503	918219
R3HDML_chr20_44332043_44356238	1/1	t0001	562	412	86	57	210	13	44	copy fasta	R3HDML	chr20	44332043	44356238
R3HDML_chr20_44332043_44356238	0/0	t0002	562	19	8	7	0	2	2	copy fasta	R3HDML	chr20	44332043	44356238
R3HDML_chr20_44332043_44356238	0/0	t0003	562	3	0	2	0	1	0	copy fasta	R3HDML	chr20	44332043	44356238
RAB10_chr2_26029084_26142454	0/0	t0001	2959	59	25	20	5	2	7	copy fasta	RAB10	chr2	26029084	26142454
RAB10_chr2_26029084_26142454	0/0	t0002	2959	53	8	12	28	0	5	copy fasta	RAB10	chr2	26029084	26142454
RAB10_chr2_26029084_26142454	0/0	t0003	2959	47	5	8	21	5	8	copy fasta	RAB10	chr2	26029084	26142454
RAB10_chr2_26029084_26142454	0/0	t0004	2959	19	14	2	0	1	2	copy fasta	RAB10	chr2	26029084	26142454
RAB10_chr2_26029084_26142454	0/0	t0005	2959	9	9	0	0	0	0	copy fasta	RAB10	chr2	26029084	26142454
RAB10_chr2_26029084_26142454	0/0	t0006	2959	9	3	2	0	0	4	copy fasta	RAB10	chr2	26029084	26142454
RAB10_chr2_26029084_26142454	0/1	t0007	2959	3	0	1	0	0	1	copy fasta	RAB10	chr2	26029084	26142454
RAB10_chr2_26029084_26142454	0/0	t0008	2959	2	0	0	2	0	0	copy fasta	RAB10	chr2	26029084	26142454
RAB10_chr2_26029084_26142454	0/0	t0009	2959	2	1	0	0	0	1	copy fasta	RAB10	chr2	26029084	26142454
RAB10_chr2_26029084_26142454	0/0	t0010	2959	2	2	0	0	0	0	copy fasta	RAB10	chr2	26029084	26142454
RAB10_chr2_26029084_26142454	0/0	t0011	2959	2	0	1	1	0	0	copy fasta	RAB10	chr2	26029084	26142454
RAB10_chr2_26029084_26142454	1/0	t0012	2959	1	0	0	0	0	0	copy fasta	RAB10	chr2	26029084	26142454
RAB10_chr2_26029084_26142454	0/0	t0013	2959	1	0	1	0	0	0	copy fasta	RAB10	chr2	26029084	26142454
RAB10_chr2_26029084_26142454	0/0	t0014	2959	1	1	0	0	0	0	copy fasta	RAB10	chr2	26029084	26142454
RAB10_chr2_26029084_26142454	0/0	t0015	2959	1	0	1	0	0	0	copy fasta	RAB10	chr2	26029084	26142454
RAB10_chr2_26029084_26142454	0/0	t0016	2959	1	0	0	1	0	0	copy fasta	RAB10	chr2	26029084	26142454
RAB11A_chr15_65864491_65896989	1/1	t0001	4245	149	27	37	51	9	23	copy fasta	RAB11A	chr15	65864491	65896989
RAB11A_chr15_65864491_65896989	0/0	t0002	4245	101	14	11	69	1	6	copy fasta	RAB11A	chr15	65864491	65896989
RAB11A_chr15_65864491_65896989	0/0	t0003	4244	13	1	0	12	0	0	copy fasta	RAB11A	chr15	65864491	65896989
RAB11A_chr15_65864491_65896989	0/0	t0004	4244	10	2	4	0	2	2	copy fasta	RAB11A	chr15	65864491	65896989
RAB11A_chr15_65864491_65896989	0/0	t0005	4231	9	8	1	0	0	0	copy fasta	RAB11A	chr15	65864491	65896989