JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAB11A_chr15_65864491_65896989	0/0	t0006	4245	8	0	0	8	0	0	copy fasta	RAB11A	chr15	65864491	65896989
RAB11A_chr15_65864491_65896989	0/0	t0007	4245	7	7	0	0	0	0	copy fasta	RAB11A	chr15	65864491	65896989
RAB11A_chr15_65864491_65896989	0/0	t0008	4245	5	0	0	5	0	0	copy fasta	RAB11A	chr15	65864491	65896989
RAB11A_chr15_65864491_65896989	0/0	t0009	4245	5	0	2	0	0	3	copy fasta	RAB11A	chr15	65864491	65896989
RAB11A_chr15_65864491_65896989	0/0	t0010	4246	4	4	0	0	0	0	copy fasta	RAB11A	chr15	65864491	65896989
RAB11A_chr15_65864491_65896989	0/0	t0011	4245	4	4	0	0	0	0	copy fasta	RAB11A	chr15	65864491	65896989
RAB11A_chr15_65864491_65896989	0/0	t0012	4245	3	3	0	0	0	0	copy fasta	RAB11A	chr15	65864491	65896989
RAB11A_chr15_65864491_65896989	0/0	t0013	4245	3	3	0	0	0	0	copy fasta	RAB11A	chr15	65864491	65896989
RAB11A_chr15_65864491_65896989	0/0	t0014	4245	3	0	0	1	0	2	copy fasta	RAB11A	chr15	65864491	65896989
RAB11A_chr15_65864491_65896989	0/0	t0015	4245	2	0	0	2	0	0	copy fasta	RAB11A	chr15	65864491	65896989
RAB11A_chr15_65864491_65896989	0/0	t0016	4244	2	0	0	1	1	0	copy fasta	RAB11A	chr15	65864491	65896989
RAB11A_chr15_65864491_65896989	0/0	t0017	4245	2	2	0	0	0	0	copy fasta	RAB11A	chr15	65864491	65896989
RAB11A_chr15_65864491_65896989	0/0	t0018	4245	2	0	0	2	0	0	copy fasta	RAB11A	chr15	65864491	65896989
RAB11A_chr15_65864491_65896989	0/0	t0019	4245	2	1	0	0	0	1	copy fasta	RAB11A	chr15	65864491	65896989
RAB11A_chr15_65864491_65896989	0/0	t0020	4245	2	0	0	2	0	0	copy fasta	RAB11A	chr15	65864491	65896989
RAB11A_chr15_65864491_65896989	0/0	t0021	4245	2	0	2	0	0	0	copy fasta	RAB11A	chr15	65864491	65896989
RAB11A_chr15_65864491_65896989	0/0	t0022	4244	1	1	0	0	0	0	copy fasta	RAB11A	chr15	65864491	65896989
RAB11A_chr15_65864491_65896989	0/0	t0023	4245	1	0	0	1	0	0	copy fasta	RAB11A	chr15	65864491	65896989
RAB11A_chr15_65864491_65896989	0/0	t0024	4245	1	0	0	0	0	1	copy fasta	RAB11A	chr15	65864491	65896989
RAB11A_chr15_65864491_65896989	0/0	t0025	4245	1	0	1	0	0	0	copy fasta	RAB11A	chr15	65864491	65896989
RAB11A_chr15_65864491_65896989	0/0	t0026	4245	1	0	0	0	1	0	copy fasta	RAB11A	chr15	65864491	65896989
RAB11A_chr15_65864491_65896989	0/0	t0027	4245	1	0	0	1	0	0	copy fasta	RAB11A	chr15	65864491	65896989
RAB11A_chr15_65864491_65896989	0/0	t0028	4245	1	0	1	0	0	0	copy fasta	RAB11A	chr15	65864491	65896989
RAB11A_chr15_65864491_65896989	0/0	t0029	4245	1	0	1	0	0	0	copy fasta	RAB11A	chr15	65864491	65896989
RAB11A_chr15_65864491_65896989	0/0	t0030	4246	1	0	0	1	0	0	copy fasta	RAB11A	chr15	65864491	65896989
RAB11A_chr15_65864491_65896989	0/0	t0031	4245	1	1	0	0	0	0	copy fasta	RAB11A	chr15	65864491	65896989
RAB11A_chr15_65864491_65896989	0/0	t0032	4245	1	1	0	0	0	0	copy fasta	RAB11A	chr15	65864491	65896989
RAB11A_chr15_65864491_65896989	0/0	t0033	4245	1	1	0	0	0	0	copy fasta	RAB11A	chr15	65864491	65896989
RAB11A_chr15_65864491_65896989	0/0	t0034	4246	1	1	0	0	0	0	copy fasta	RAB11A	chr15	65864491	65896989
RAB11A_chr15_65864491_65896989	0/0	t0035	4245	1	1	0	0	0	0	copy fasta	RAB11A	chr15	65864491	65896989
RAB11A_chr15_65864491_65896989	0/0	t0036	4244	1	1	0	0	0	0	copy fasta	RAB11A	chr15	65864491	65896989
RAB11A_chr15_65864491_65896989	0/0	t0037	4246	1	1	0	0	0	0	copy fasta	RAB11A	chr15	65864491	65896989
RAB11B_chr19_8385360_8409434	0/0	t0001	934	260	71	57	81	14	37	copy fasta	RAB11B	chr19	8385360	8409434
RAB11B_chr19_8385360_8409434	0/1	t0002	934	116	6	21	78	3	7	copy fasta	RAB11B	chr19	8385360	8409434
RAB11B_chr19_8385360_8409434	1/0	t0003	934	15	14	0	0	0	0	copy fasta	RAB11B	chr19	8385360	8409434
RAB11B_chr19_8385360_8409434	0/0	t0004	935	5	0	2	1	0	2	copy fasta	RAB11B	chr19	8385360	8409434
RAB11B_chr19_8385360_8409434	0/0	t0005	934	5	0	0	5	0	0	copy fasta	RAB11B	chr19	8385360	8409434
RAB11B_chr19_8385360_8409434	0/0	t0006	934	4	0	0	4	0	0	copy fasta	RAB11B	chr19	8385360	8409434
RAB11B_chr19_8385360_8409434	0/0	t0007	934	3	0	0	3	0	0	copy fasta	RAB11B	chr19	8385360	8409434
RAB11B_chr19_8385360_8409434	0/0	t0008	934	2	2	0	0	0	0	copy fasta	RAB11B	chr19	8385360	8409434
RAB11B_chr19_8385360_8409434	0/0	t0009	935	2	0	0	2	0	0	copy fasta	RAB11B	chr19	8385360	8409434
RAB11B_chr19_8385360_8409434	0/0	t0010	934	2	0	0	0	0	2	copy fasta	RAB11B	chr19	8385360	8409434
RAB11B_chr19_8385360_8409434	0/0	t0011	934	2	2	0	0	0	0	copy fasta	RAB11B	chr19	8385360	8409434
RAB11B_chr19_8385360_8409434	0/0	t0012	934	2	2	0	0	0	0	copy fasta	RAB11B	chr19	8385360	8409434
RAB11B_chr19_8385360_8409434	0/0	t0013	934	1	0	0	0	1	0	copy fasta	RAB11B	chr19	8385360	8409434
RAB11B_chr19_8385360_8409434	0/0	t0014	936	1	0	0	1	0	0	copy fasta	RAB11B	chr19	8385360	8409434
RAB11B_chr19_8385360_8409434	0/0	t0015	934	1	0	0	1	0	0	copy fasta	RAB11B	chr19	8385360	8409434
RAB11B_chr19_8385360_8409434	0/0	t0016	934	1	1	0	0	0	0	copy fasta	RAB11B	chr19	8385360	8409434
RAB11B_chr19_8385360_8409434	0/0	t0017	934	1	1	0	0	0	0	copy fasta	RAB11B	chr19	8385360	8409434
RAB11B_chr19_8385360_8409434	0/0	t0018	934	1	1	0	0	0	0	copy fasta	RAB11B	chr19	8385360	8409434