Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATXN10_chr22_45666834_45850307	0/0	t0012	1867	1	1	0	0	0	0	copy fasta	ATXN10	chr22	45666834	45850307
ATXN10_chr22_45666834_45850307	0/0	t0013	1867	1	0	0	1	0	0	copy fasta	ATXN10	chr22	45666834	45850307
ATXN10_chr22_45666834_45850307	0/0	t0014	1867	1	1	0	0	0	0	copy fasta	ATXN10	chr22	45666834	45850307
ATXN10_chr22_45666834_45850307	0/0	t0015	1867	1	0	0	0	0	1	copy fasta	ATXN10	chr22	45666834	45850307
ATXN10_chr22_45666834_45850307	0/0	t0016	1867	1	1	0	0	0	0	copy fasta	ATXN10	chr22	45666834	45850307
ATXN10_chr22_45666834_45850307	0/0	t0017	1867	1	0	0	1	0	0	copy fasta	ATXN10	chr22	45666834	45850307
ATXN10_chr22_45666834_45850307	0/0	t0018	1867	1	1	0	0	0	0	copy fasta	ATXN10	chr22	45666834	45850307
ATXN1L_chr16_71840976_71862328	0/0	t0001	5827	140	16	20	85	5	14	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	t0002	5827	65	4	7	37	1	16	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/1	t0003	5827	42	12	11	7	3	8	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	t0004	5826	33	1	17	15	0	0	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	1/0	t0005	5827	29	5	14	7	0	2	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	t0006	5827	20	19	1	0	0	0	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	t0007	5827	14	13	1	0	0	0	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	t0008	5827	13	0	0	13	0	0	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	t0009	5827	8	0	5	0	0	3	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	t0010	5827	5	4	0	0	1	0	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	t0011	5827	4	0	0	4	0	0	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	t0012	5827	4	0	0	4	0	0	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	t0013	5827	3	0	0	3	0	0	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	t0014	5827	3	0	3	0	0	0	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	t0015	5827	3	3	0	0	0	0	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	t0016	5827	2	0	0	1	0	1	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	t0017	5826	2	0	0	2	0	0	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	t0018	5827	2	0	0	2	0	0	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	t0019	5827	2	2	0	0	0	0	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	t0020	5827	1	0	0	1	0	0	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	t0021	5827	1	0	0	0	0	1	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	t0022	5827	1	0	0	1	0	0	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	t0023	5827	1	1	0	0	0	0	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	t0024	5826	1	0	0	1	0	0	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	t0025	5826	1	0	1	0	0	0	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	t0026	5827	1	1	0	0	0	0	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	t0027	5827	1	0	0	1	0	0	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	t0028	5827	1	0	1	0	0	0	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	t0029	5827	1	0	0	1	0	0	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	t0030	5827	1	0	1	0	0	0	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	t0031	5827	1	1	0	0	0	0	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	t0032	5827	1	0	1	0	0	0	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	t0033	5827	1	0	0	1	0	0	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	t0034	5827	1	0	0	1	0	0	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	t0035	5827	1	1	0	0	0	0	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	t0036	5827	1	0	0	0	1	0	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	t0037	5827	1	0	0	1	0	0	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	t0038	5827	1	0	1	0	0	0	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	t0039	5827	1	1	0	0	0	0	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	t0040	5827	1	0	0	0	1	0	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	t0041	5827	1	0	0	0	0	1	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	t0042	5827	1	0	0	0	0	1	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	t0043	5827	1	0	0	0	0	1	copy fasta	ATXN1L	chr16	71840976	71862328