JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAB11FIP3_chr16_420649_528011	0/0	t0010	2558	10	3	0	2	0	5	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0011	2558	9	6	0	3	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0012	2560	8	3	3	2	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0013	2574	6	6	0	0	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0014	2528	6	4	2	0	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0015	2558	6	6	0	0	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0016	2534	4	0	0	2	2	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0017	2530	4	0	4	0	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0018	2530	3	3	0	0	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0019	2552	3	2	1	0	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0020	2576	3	0	2	1	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0021	2576	2	0	2	0	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0022	2552	2	2	0	0	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0023	2562	2	2	0	0	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0024	2556	2	2	0	0	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0025	2572	2	2	0	0	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0026	2527	1	0	0	1	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0027	2535	1	0	0	1	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0028	2554	1	0	0	1	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0029	2562	1	0	0	0	0	1	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0030	2530	1	0	1	0	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0031	2562	1	1	0	0	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0032	2578	1	1	0	0	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0033	2530	1	1	0	0	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0034	2556	1	0	0	1	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0035	2530	1	1	0	0	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0036	2556	1	1	0	0	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0037	2554	1	1	0	0	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0038	2548	1	0	1	0	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0039	2548	1	0	0	0	0	1	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0040	2556	1	1	0	0	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0041	2566	1	1	0	0	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0042	2558	1	0	1	0	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0043	2554	1	1	0	0	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0044	2550	1	1	0	0	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0045	2574	1	0	0	1	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0046	2572	1	0	0	1	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0047	2556	1	0	0	1	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0048	2572	1	0	0	1	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0049	2556	1	0	0	1	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0050	2556	1	0	0	1	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0051	2616	1	0	0	1	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0052	2530	1	1	0	0	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0053	2552	1	1	0	0	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0054	2552	1	1	0	0	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0055	2532	1	0	1	0	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0056	2560	1	1	0	0	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0057	2572	1	1	0	0	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0058	2574	1	1	0	0	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	t0059	2558	1	1	0	0	0	0	copy fasta	RAB11FIP3	chr16	420649	528011