JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAB12_chr18_8604437_8644383	0/0	t0004	1122	27	2	3	18	0	4	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0005	1123	25	4	5	8	3	5	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0006	1126	17	0	4	12	0	1	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0007	1120	15	3	2	10	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0008	1127	13	6	3	4	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0009	1117	13	7	4	0	1	1	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0010	1119	12	9	2	0	0	1	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0011	1130	9	0	4	3	1	1	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0012	1118	9	5	4	0	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0013	1132	8	0	2	3	0	3	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/1	t0014	1113	7	0	4	0	0	2	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0015	1128	7	2	1	4	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0016	1129	7	0	1	4	1	1	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0017	1119	7	0	3	3	1	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0018	1131	6	0	1	5	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0019	1122	6	4	1	0	1	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0020	1103	5	4	1	0	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0021	1139	5	1	0	2	0	2	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0022	1120	5	2	1	0	1	1	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0023	1107	4	1	0	1	0	2	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0024	1108	4	0	1	3	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0025	1114	4	1	1	0	0	2	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0026	1116	4	0	4	0	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0027	1122	3	0	0	3	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0028	1105	3	0	0	3	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0029	1106	3	0	0	2	0	1	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0030	1115	3	1	1	1	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0031	1135	3	0	0	2	0	1	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0032	1115	3	3	0	0	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0033	1116	3	2	1	0	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0034	1121	3	1	1	0	0	1	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0035	1122	2	0	2	0	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0036	1137	2	0	0	2	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0037	1140	2	1	1	0	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0038	1143	2	0	0	2	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0039	1148	2	0	1	0	0	1	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0040	1113	2	2	0	0	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0041	1106	2	2	0	0	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0042	1098	2	2	0	0	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0043	1101	2	1	1	0	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0044	1112	2	2	0	0	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0045	1113	2	2	0	0	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0046	1114	2	2	0	0	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0047	1123	2	2	0	0	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0048	1126	1	0	1	0	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0049	1127	1	1	0	0	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0050	1101	1	0	0	1	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0051	1125	1	0	0	1	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0052	1120	1	0	0	1	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0053	1114	1	1	0	0	0	0	copy fasta	RAB12	chr18	8604437	8644383