JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAB12_chr18_8604437_8644383	0/0	t0054	1102	1	0	0	1	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0055	1103	1	0	0	0	0	1	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0056	1104	1	0	0	1	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0057	1111	1	0	0	1	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0058	1112	1	0	0	1	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0059	1117	1	0	1	0	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0060	1119	1	1	0	0	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0061	1136	1	0	1	0	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0062	1145	1	0	0	1	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0063	1106	1	0	0	0	1	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0064	1125	1	0	0	0	0	1	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0065	1129	1	1	0	0	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0066	1131	1	1	0	0	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0067	1137	1	1	0	0	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0068	1107	1	1	0	0	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0069	1108	1	1	0	0	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0070	1124	1	1	0	0	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	t0071	1121	1	1	0	0	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB13_chr1_153976650_153991339	1/1	t0001	553	406	83	74	191	14	42	copy fasta	RAB13	chr1	153976650	153991339
RAB13_chr1_153976650_153991339	0/0	t0002	553	1	0	0	1	0	0	copy fasta	RAB13	chr1	153976650	153991339
RAB13_chr1_153976650_153991339	0/0	t0003	553	1	1	0	0	0	0	copy fasta	RAB13	chr1	153976650	153991339
RAB14_chr9_121173133_121206869	0/0	t0001	3502	135	3	25	78	6	23	copy fasta	RAB14	chr9	121173133	121206869
RAB14_chr9_121173133_121206869	0/0	t0002	3502	69	4	16	39	3	7	copy fasta	RAB14	chr9	121173133	121206869
RAB14_chr9_121173133_121206869	1/0	t0003	3502	63	30	21	7	4	0	copy fasta	RAB14	chr9	121173133	121206869
RAB14_chr9_121173133_121206869	0/0	t0004	3499	62	25	2	35	0	0	copy fasta	RAB14	chr9	121173133	121206869
RAB14_chr9_121173133_121206869	0/0	t0005	3496	17	2	4	5	2	4	copy fasta	RAB14	chr9	121173133	121206869
RAB14_chr9_121173133_121206869	0/0	t0006	3501	8	8	0	0	0	0	copy fasta	RAB14	chr9	121173133	121206869
RAB14_chr9_121173133_121206869	0/0	t0007	3502	5	5	0	0	0	0	copy fasta	RAB14	chr9	121173133	121206869
RAB14_chr9_121173133_121206869	0/0	t0008	3502	4	4	0	0	0	0	copy fasta	RAB14	chr9	121173133	121206869
RAB14_chr9_121173133_121206869	0/0	t0009	3502	2	0	0	2	0	0	copy fasta	RAB14	chr9	121173133	121206869
RAB14_chr9_121173133_121206869	0/0	t0010	3502	2	0	0	2	0	0	copy fasta	RAB14	chr9	121173133	121206869
RAB14_chr9_121173133_121206869	0/0	t0011	3502	2	2	0	0	0	0	copy fasta	RAB14	chr9	121173133	121206869
RAB14_chr9_121173133_121206869	0/0	t0012	3502	2	0	2	0	0	0	copy fasta	RAB14	chr9	121173133	121206869
RAB14_chr9_121173133_121206869	0/0	t0013	3502	1	0	0	1	0	0	copy fasta	RAB14	chr9	121173133	121206869
RAB14_chr9_121173133_121206869	0/0	t0014	3502	1	0	0	0	1	0	copy fasta	RAB14	chr9	121173133	121206869
RAB14_chr9_121173133_121206869	0/0	t0015	3502	1	0	1	0	0	0	copy fasta	RAB14	chr9	121173133	121206869
RAB14_chr9_121173133_121206869	0/0	t0016	3502	1	0	0	1	0	0	copy fasta	RAB14	chr9	121173133	121206869
RAB14_chr9_121173133_121206869	0/0	t0017	3503	1	0	0	1	0	0	copy fasta	RAB14	chr9	121173133	121206869
RAB14_chr9_121173133_121206869	0/0	t0018	3501	1	1	0	0	0	0	copy fasta	RAB14	chr9	121173133	121206869
RAB14_chr9_121173133_121206869	0/0	t0019	3502	1	1	0	0	0	0	copy fasta	RAB14	chr9	121173133	121206869
RAB14_chr9_121173133_121206869	0/0	t0020	3502	1	1	0	0	0	0	copy fasta	RAB14	chr9	121173133	121206869
RAB14_chr9_121173133_121206869	0/0	t0021	3502	1	1	0	0	0	0	copy fasta	RAB14	chr9	121173133	121206869
RAB14_chr9_121173133_121206869	0/0	t0022	3502	1	1	0	0	0	0	copy fasta	RAB14	chr9	121173133	121206869
RAB14_chr9_121173133_121206869	0/1	t0023	3502	1	0	0	0	0	0	copy fasta	RAB14	chr9	121173133	121206869
RAB14_chr9_121173133_121206869	0/0	t0024	3502	1	0	0	1	0	0	copy fasta	RAB14	chr9	121173133	121206869
RAB14_chr9_121173133_121206869	0/0	t0025	3502	1	0	1	0	0	0	copy fasta	RAB14	chr9	121173133	121206869
RAB15_chr14_64940816_64977336	1/1	t0001	2799	94	4	19	44	9	16	copy fasta	RAB15	chr14	64940816	64977336
RAB15_chr14_64940816_64977336	0/0	t0002	2799	75	13	2	54	3	3	copy fasta	RAB15	chr14	64940816	64977336
RAB15_chr14_64940816_64977336	0/0	t0003	2799	32	1	4	20	2	5	copy fasta	RAB15	chr14	64940816	64977336
RAB15_chr14_64940816_64977336	0/0	t0004	2804	25	2	6	13	0	4	copy fasta	RAB15	chr14	64940816	64977336