JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAB15_chr14_64940816_64977336	0/0	t0005	2799	23	23	0	0	0	0	copy fasta	RAB15	chr14	64940816	64977336
RAB15_chr14_64940816_64977336	0/0	t0006	2799	17	4	10	2	0	1	copy fasta	RAB15	chr14	64940816	64977336
RAB15_chr14_64940816_64977336	0/0	t0007	2799	15	0	0	14	0	1	copy fasta	RAB15	chr14	64940816	64977336
RAB15_chr14_64940816_64977336	0/0	t0008	2804	11	3	0	1	1	6	copy fasta	RAB15	chr14	64940816	64977336
RAB15_chr14_64940816_64977336	0/0	t0009	2799	10	7	3	0	0	0	copy fasta	RAB15	chr14	64940816	64977336
RAB15_chr14_64940816_64977336	0/0	t0010	2799	9	7	2	0	0	0	copy fasta	RAB15	chr14	64940816	64977336
RAB15_chr14_64940816_64977336	0/0	t0011	2804	8	0	0	8	0	0	copy fasta	RAB15	chr14	64940816	64977336
RAB15_chr14_64940816_64977336	0/0	t0012	2799	8	4	0	4	0	0	copy fasta	RAB15	chr14	64940816	64977336
RAB15_chr14_64940816_64977336	0/0	t0013	2799	7	0	0	7	0	0	copy fasta	RAB15	chr14	64940816	64977336
RAB15_chr14_64940816_64977336	0/0	t0014	2799	7	7	0	0	0	0	copy fasta	RAB15	chr14	64940816	64977336
RAB15_chr14_64940816_64977336	0/0	t0015	2804	4	1	0	1	1	1	copy fasta	RAB15	chr14	64940816	64977336
RAB15_chr14_64940816_64977336	0/0	t0016	2799	4	3	1	0	0	0	copy fasta	RAB15	chr14	64940816	64977336
RAB15_chr14_64940816_64977336	0/0	t0017	2804	3	1	1	0	1	0	copy fasta	RAB15	chr14	64940816	64977336
RAB15_chr14_64940816_64977336	0/0	t0018	2802	3	0	1	0	0	2	copy fasta	RAB15	chr14	64940816	64977336
RAB15_chr14_64940816_64977336	0/0	t0019	2799	2	1	0	1	0	0	copy fasta	RAB15	chr14	64940816	64977336
RAB15_chr14_64940816_64977336	0/0	t0020	2799	2	0	2	0	0	0	copy fasta	RAB15	chr14	64940816	64977336
RAB15_chr14_64940816_64977336	0/0	t0021	2799	2	2	0	0	0	0	copy fasta	RAB15	chr14	64940816	64977336
RAB15_chr14_64940816_64977336	0/0	t0022	2799	2	2	0	0	0	0	copy fasta	RAB15	chr14	64940816	64977336
RAB15_chr14_64940816_64977336	0/0	t0023	2804	1	0	0	0	0	1	copy fasta	RAB15	chr14	64940816	64977336
RAB15_chr14_64940816_64977336	0/0	t0024	2799	1	1	0	0	0	0	copy fasta	RAB15	chr14	64940816	64977336
RAB15_chr14_64940816_64977336	0/0	t0025	2799	1	0	0	0	0	1	copy fasta	RAB15	chr14	64940816	64977336
RAB15_chr14_64940816_64977336	0/0	t0026	2799	1	0	0	1	0	0	copy fasta	RAB15	chr14	64940816	64977336
RAB15_chr14_64940816_64977336	0/0	t0027	2799	1	0	0	1	0	0	copy fasta	RAB15	chr14	64940816	64977336
RAB15_chr14_64940816_64977336	0/0	t0028	2799	1	0	0	1	0	0	copy fasta	RAB15	chr14	64940816	64977336
RAB15_chr14_64940816_64977336	0/0	t0029	2799	1	0	0	0	0	1	copy fasta	RAB15	chr14	64940816	64977336
RAB15_chr14_64940816_64977336	0/0	t0030	2799	1	0	1	0	0	0	copy fasta	RAB15	chr14	64940816	64977336
RAB15_chr14_64940816_64977336	0/0	t0031	2799	1	0	1	0	0	0	copy fasta	RAB15	chr14	64940816	64977336
RAB15_chr14_64940816_64977336	0/0	t0032	2799	1	0	0	0	1	0	copy fasta	RAB15	chr14	64940816	64977336
RAB15_chr14_64940816_64977336	0/0	t0033	2799	1	0	1	0	0	0	copy fasta	RAB15	chr14	64940816	64977336
RAB15_chr14_64940816_64977336	0/0	t0034	2799	1	1	0	0	0	0	copy fasta	RAB15	chr14	64940816	64977336
RAB15_chr14_64940816_64977336	0/0	t0035	2799	1	1	0	0	0	0	copy fasta	RAB15	chr14	64940816	64977336
RAB15_chr14_64940816_64977336	0/0	t0036	2799	1	0	1	0	0	0	copy fasta	RAB15	chr14	64940816	64977336
RAB15_chr14_64940816_64977336	0/0	t0037	2799	1	1	0	0	0	0	copy fasta	RAB15	chr14	64940816	64977336
RAB15_chr14_64940816_64977336	0/0	t0038	2799	1	1	0	0	0	0	copy fasta	RAB15	chr14	64940816	64977336
RAB15_chr14_64940816_64977336	0/0	t0039	2799	1	1	0	0	0	0	copy fasta	RAB15	chr14	64940816	64977336
RAB15_chr14_64940816_64977336	0/0	t0040	2799	1	0	1	0	0	0	copy fasta	RAB15	chr14	64940816	64977336
RAB15_chr14_64940816_64977336	0/0	t0041	2799	1	1	0	0	0	0	copy fasta	RAB15	chr14	64940816	64977336
RAB17_chr2_237569326_237595734	1/0	t0001	965	139	5	32	76	10	15	copy fasta	RAB17	chr2	237569326	237595734
RAB17_chr2_237569326_237595734	0/1	t0002	962	56	8	8	37	0	2	copy fasta	RAB17	chr2	237569326	237595734
RAB17_chr2_237569326_237595734	0/0	t0003	965	55	9	4	29	4	9	copy fasta	RAB17	chr2	237569326	237595734
RAB17_chr2_237569326_237595734	0/0	t0004	965	53	11	8	25	0	9	copy fasta	RAB17	chr2	237569326	237595734
RAB17_chr2_237569326_237595734	0/0	t0005	965	39	34	5	0	0	0	copy fasta	RAB17	chr2	237569326	237595734
RAB17_chr2_237569326_237595734	0/0	t0006	962	20	0	4	16	0	0	copy fasta	RAB17	chr2	237569326	237595734
RAB17_chr2_237569326_237595734	0/0	t0007	965	13	3	6	1	0	3	copy fasta	RAB17	chr2	237569326	237595734
RAB17_chr2_237569326_237595734	0/0	t0008	965	10	10	0	0	0	0	copy fasta	RAB17	chr2	237569326	237595734
RAB17_chr2_237569326_237595734	0/0	t0009	965	9	0	1	3	0	5	copy fasta	RAB17	chr2	237569326	237595734
RAB17_chr2_237569326_237595734	0/0	t0010	965	9	2	0	4	0	3	copy fasta	RAB17	chr2	237569326	237595734
RAB17_chr2_237569326_237595734	0/0	t0011	965	5	5	0	0	0	0	copy fasta	RAB17	chr2	237569326	237595734
RAB17_chr2_237569326_237595734	0/0	t0012	965	3	3	0	0	0	0	copy fasta	RAB17	chr2	237569326	237595734
RAB17_chr2_237569326_237595734	0/0	t0013	965	2	2	0	0	0	0	copy fasta	RAB17	chr2	237569326	237595734