JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAB17_chr2_237569326_237595734	0/0	t0014	965	2	0	0	1	0	1	copy fasta	RAB17	chr2	237569326	237595734
RAB17_chr2_237569326_237595734	0/0	t0015	965	2	2	0	0	0	0	copy fasta	RAB17	chr2	237569326	237595734
RAB17_chr2_237569326_237595734	0/0	t0016	965	1	0	1	0	0	0	copy fasta	RAB17	chr2	237569326	237595734
RAB17_chr2_237569326_237595734	0/0	t0017	965	1	0	1	0	0	0	copy fasta	RAB17	chr2	237569326	237595734
RAB17_chr2_237569326_237595734	0/0	t0018	965	1	0	0	0	0	1	copy fasta	RAB17	chr2	237569326	237595734
RAB17_chr2_237569326_237595734	0/0	t0019	965	1	1	0	0	0	0	copy fasta	RAB17	chr2	237569326	237595734
RAB17_chr2_237569326_237595734	0/0	t0020	965	1	1	0	0	0	0	copy fasta	RAB17	chr2	237569326	237595734
RAB17_chr2_237569326_237595734	0/0	t0021	965	1	1	0	0	0	0	copy fasta	RAB17	chr2	237569326	237595734
RAB17_chr2_237569326_237595734	0/0	t0022	965	1	1	0	0	0	0	copy fasta	RAB17	chr2	237569326	237595734
RAB18_chr10_27499304_27547239	0/0	t0001	4255	108	18	26	37	7	20	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/1	t0002	4255	83	12	13	45	4	8	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	t0003	4254	43	2	10	26	1	4	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	t0004	4254	27	14	8	0	3	2	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	t0005	4255	27	0	4	23	0	0	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	t0006	4255	19	0	0	15	0	4	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	t0007	4254	17	4	8	5	0	0	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	t0008	4255	11	10	1	0	0	0	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	t0009	4255	10	0	0	10	0	0	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	t0010	4255	9	9	0	0	0	0	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	t0011	4255	5	0	0	5	0	0	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	t0012	4255	3	0	0	3	0	0	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	t0013	4255	3	0	0	3	0	0	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	t0014	4255	2	2	0	0	0	0	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	t0015	4255	2	1	1	0	0	0	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	t0016	4254	2	2	0	0	0	0	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	t0017	4255	2	2	0	0	0	0	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	t0018	4254	2	2	0	0	0	0	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	t0019	4254	2	0	2	0	0	0	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	t0020	4255	2	2	0	0	0	0	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	t0021	4255	2	2	0	0	0	0	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	t0022	4254	1	0	0	1	0	0	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	t0023	4255	1	1	0	0	0	0	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	t0024	4256	1	1	0	0	0	0	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	t0025	4255	1	1	0	0	0	0	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	t0026	4255	1	1	0	0	0	0	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	t0027	4255	1	0	0	0	0	1	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	t0028	4255	1	0	0	0	0	1	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	t0029	4255	1	1	0	0	0	0	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	t0030	4256	1	1	0	0	0	0	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	t0031	4255	1	0	1	0	0	0	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	t0032	4255	1	1	0	0	0	0	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	t0033	4256	1	1	0	0	0	0	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	1/0	t0034	4255	1	0	0	0	0	0	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	t0035	4255	1	0	0	0	0	1	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	t0036	4255	1	0	1	0	0	0	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	t0037	4255	1	0	0	0	1	0	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	t0038	4255	1	0	0	1	0	0	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	t0039	4255	1	0	1	0	0	0	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	t0040	4255	1	1	0	0	0	0	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	t0041	4255	1	1	0	0	0	0	copy fasta	RAB18	chr10	27499304	27547239