JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAB18_chr10_27499304_27547239	0/0	t0042	4255	1	0	0	0	0	1	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	t0043	4211	1	0	0	1	0	0	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	t0044	4255	1	0	0	1	0	0	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	t0045	4256	1	0	0	1	0	0	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	t0046	4254	1	0	0	1	0	0	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	t0047	4255	1	1	0	0	0	0	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	t0048	4254	1	1	0	0	0	0	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	t0049	4255	1	1	0	0	0	0	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	t0050	4256	1	1	0	0	0	0	copy fasta	RAB18	chr10	27499304	27547239
RAB19_chr7_140399058_140432974	1/0	t0001	2008	89	16	20	31	5	16	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/1	t0002	2007	71	8	12	40	5	5	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0003	2007	57	6	11	32	0	8	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0004	2006	46	0	16	26	1	3	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0005	2004	42	15	4	20	1	2	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0006	2009	14	1	3	7	1	2	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0007	2008	10	0	1	8	0	1	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0008	2004	9	8	1	0	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0009	2003	8	8	0	0	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0010	2007	5	4	1	0	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0011	2009	5	0	0	5	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0012	2003	5	0	0	3	1	1	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0013	2006	4	4	0	0	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0014	2007	4	2	2	0	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0015	2008	4	1	1	1	0	1	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0016	2007	4	4	0	0	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0017	2007	3	0	0	2	0	1	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0018	2007	3	0	1	0	1	1	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0019	2008	3	0	0	3	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0020	2009	3	0	0	2	0	1	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0021	2004	3	3	0	0	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0022	2006	2	0	0	2	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0023	2008	2	2	0	0	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0024	2007	2	0	2	0	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0025	2007	2	2	0	0	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0026	2010	2	1	0	1	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0027	2004	2	2	0	0	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0028	2007	2	0	0	1	0	1	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0029	2004	1	1	0	0	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0030	2007	1	0	0	1	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0031	2004	1	0	0	1	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0032	2007	1	0	0	1	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0033	2007	1	0	0	0	1	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0034	2008	1	1	0	0	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0035	2007	1	0	0	1	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0036	2007	1	0	0	0	0	1	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0037	2006	1	1	0	0	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0038	2006	1	1	0	0	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0039	2006	1	0	0	1	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0040	2007	1	0	1	0	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0041	2007	1	0	0	1	0	0	copy fasta	RAB19	chr7	140399058	140432974