Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATXN1_chr6_16294112_16766460	1/0	t0001	8110	47	10	14	16	2	4	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	t0002	8113	31	8	3	17	1	2	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	t0003	8123	11	10	0	1	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	t0004	8117	10	0	4	0	1	5	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	t0005	8113	7	0	0	7	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	t0006	8117	7	7	0	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	t0007	8110	6	2	1	0	0	3	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	t0008	8128	6	0	1	5	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	t0009	8113	4	2	0	2	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	t0010	8112	4	4	0	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	t0011	8112	3	3	0	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	t0012	8110	3	3	0	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	t0013	8110	2	0	2	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	t0014	8116	2	0	2	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	t0015	8114	2	2	0	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	t0016	8113	2	0	0	2	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	t0017	8128	2	0	2	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	t0018	8113	2	1	1	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	t0019	8128	1	0	1	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	t0020	8110	1	1	0	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	t0021	8110	1	0	0	0	0	1	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	t0022	8113	1	0	1	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	t0023	8117	1	0	0	0	0	1	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	t0024	8111	1	0	1	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	t0025	8117	1	0	1	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	t0026	8113	1	0	0	1	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	t0027	8110	1	0	0	0	0	1	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/1	t0028	8110	1	0	0	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	t0029	8113	1	0	0	1	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	t0030	8114	1	0	1	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	t0031	8116	1	1	0	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	t0032	8111	1	0	0	1	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	t0033	8113	1	1	0	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	t0034	8113	1	0	1	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	t0035	8113	1	1	0	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	t0036	8116	1	0	0	1	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	t0037	8110	1	0	0	0	0	1	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	t0038	8110	1	1	0	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	t0039	8112	1	0	1	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	t0040	8123	1	1	0	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	t0041	8127	1	0	0	1	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	t0042	8123	1	1	0	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	t0043	8128	1	0	0	1	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	t0044	8123	1	0	0	0	0	1	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	t0045	8113	1	0	0	0	0	1	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	t0046	8110	1	0	1	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	t0047	8113	1	1	0	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	t0048	8113	1	1	0	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	t0049	8123	1	1	0	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN2L_chr16_28817999_28842232	1/1	t0001	1229	330	72	63	147	12	34	copy fasta	ATXN2L	chr16	28817999	28842232