JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAB19_chr7_140399058_140432974	0/0	t0042	2008	1	0	0	0	0	1	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0043	2007	1	0	0	1	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0044	2009	1	0	0	1	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0045	2008	1	1	0	0	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0046	2008	1	0	0	1	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0047	2008	1	0	0	0	0	1	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0048	2008	1	1	0	0	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0049	2007	1	0	0	1	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0050	2007	1	0	0	1	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0051	2009	1	0	0	0	0	1	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0052	2010	1	0	0	0	0	1	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0053	2008	1	1	0	0	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0054	2010	1	0	0	0	0	1	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0055	2004	1	0	0	1	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0056	2005	1	0	0	1	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0057	2005	1	0	0	1	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0058	2005	1	0	0	1	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0059	2007	1	0	0	1	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0060	2005	1	1	0	0	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0061	2005	1	0	0	0	0	1	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0062	2006	1	0	0	1	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0063	2009	1	1	0	0	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	t0064	2006	1	0	0	1	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB1A_chr2_65081854_65135106	1/1	t0001	1831	315	66	60	140	11	36	copy fasta	RAB1A	chr2	65081854	65135106
RAB1A_chr2_65081854_65135106	0/0	t0002	1831	17	16	1	0	0	0	copy fasta	RAB1A	chr2	65081854	65135106
RAB1A_chr2_65081854_65135106	0/0	t0003	1831	4	4	0	0	0	0	copy fasta	RAB1A	chr2	65081854	65135106
RAB1A_chr2_65081854_65135106	0/0	t0004	1831	1	0	0	0	1	0	copy fasta	RAB1A	chr2	65081854	65135106
RAB1A_chr2_65081854_65135106	0/0	t0005	1831	1	0	1	0	0	0	copy fasta	RAB1A	chr2	65081854	65135106
RAB1A_chr2_65081854_65135106	0/0	t0006	1831	1	1	0	0	0	0	copy fasta	RAB1A	chr2	65081854	65135106
RAB1A_chr2_65081854_65135106	0/0	t0007	1831	1	1	0	0	0	0	copy fasta	RAB1A	chr2	65081854	65135106
RAB1B_chr11_66263639_66282492	1/0	t0001	1296	192	61	24	90	2	14	copy fasta	RAB1B	chr11	66263639	66282492
RAB1B_chr11_66263639_66282492	0/1	t0002	1296	130	15	29	56	11	18	copy fasta	RAB1B	chr11	66263639	66282492
RAB1B_chr11_66263639_66282492	0/0	t0003	1293	85	11	12	53	3	6	copy fasta	RAB1B	chr11	66263639	66282492
RAB1B_chr11_66263639_66282492	0/0	t0004	1293	3	0	3	0	0	0	copy fasta	RAB1B	chr11	66263639	66282492
RAB1B_chr11_66263639_66282492	0/0	t0005	1293	3	3	0	0	0	0	copy fasta	RAB1B	chr11	66263639	66282492
RAB1B_chr11_66263639_66282492	0/0	t0006	1296	2	2	0	0	0	0	copy fasta	RAB1B	chr11	66263639	66282492
RAB1B_chr11_66263639_66282492	0/0	t0007	1296	2	0	0	0	2	0	copy fasta	RAB1B	chr11	66263639	66282492
RAB1B_chr11_66263639_66282492	0/0	t0008	1293	1	0	0	1	0	0	copy fasta	RAB1B	chr11	66263639	66282492
RAB1B_chr11_66263639_66282492	0/0	t0009	1293	1	0	0	0	0	1	copy fasta	RAB1B	chr11	66263639	66282492
RAB1B_chr11_66263639_66282492	0/0	t0010	1296	1	0	1	0	0	0	copy fasta	RAB1B	chr11	66263639	66282492
RAB1B_chr11_66263639_66282492	0/0	t0011	1296	1	0	1	0	0	0	copy fasta	RAB1B	chr11	66263639	66282492
RAB1B_chr11_66263639_66282492	0/0	t0012	1296	1	0	1	0	0	0	copy fasta	RAB1B	chr11	66263639	66282492
RAB1B_chr11_66263639_66282492	0/0	t0013	1296	1	0	1	0	0	0	copy fasta	RAB1B	chr11	66263639	66282492
RAB1B_chr11_66263639_66282492	0/0	t0014	1283	1	0	0	1	0	0	copy fasta	RAB1B	chr11	66263639	66282492
RAB1B_chr11_66263639_66282492	0/0	t0015	1296	1	0	0	0	0	1	copy fasta	RAB1B	chr11	66263639	66282492
RAB1B_chr11_66263639_66282492	0/0	t0016	1296	1	0	0	1	0	0	copy fasta	RAB1B	chr11	66263639	66282492
RAB20_chr13_110518066_110566722	1/1	t0001	803	253	56	49	113	6	27	copy fasta	RAB20	chr13	110518066	110566722
RAB20_chr13_110518066_110566722	0/0	t0002	803	85	10	16	47	2	10	copy fasta	RAB20	chr13	110518066	110566722
RAB20_chr13_110518066_110566722	0/0	t0003	803	42	11	2	25	0	4	copy fasta	RAB20	chr13	110518066	110566722
RAB20_chr13_110518066_110566722	0/0	t0004	802	23	8	8	0	4	3	copy fasta	RAB20	chr13	110518066	110566722