JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAB22A_chr20_58304715_58372507	0/0	t0097	8067	1	0	0	0	1	0	copy fasta	RAB22A	chr20	58304715	58372507
RAB22A_chr20_58304715_58372507	0/0	t0098	8063	1	0	0	1	0	0	copy fasta	RAB22A	chr20	58304715	58372507
RAB22A_chr20_58304715_58372507	0/0	t0099	8067	1	0	0	1	0	0	copy fasta	RAB22A	chr20	58304715	58372507
RAB22A_chr20_58304715_58372507	0/0	t0100	8063	1	1	0	0	0	0	copy fasta	RAB22A	chr20	58304715	58372507
RAB22A_chr20_58304715_58372507	0/0	t0101	8067	1	1	0	0	0	0	copy fasta	RAB22A	chr20	58304715	58372507
RAB22A_chr20_58304715_58372507	0/0	t0102	8067	1	0	0	1	0	0	copy fasta	RAB22A	chr20	58304715	58372507
RAB22A_chr20_58304715_58372507	0/0	t0103	8066	1	0	0	0	0	1	copy fasta	RAB22A	chr20	58304715	58372507
RAB22A_chr20_58304715_58372507	0/0	t0104	8066	1	0	0	0	0	1	copy fasta	RAB22A	chr20	58304715	58372507
RAB22A_chr20_58304715_58372507	0/0	t0105	8067	1	0	0	1	0	0	copy fasta	RAB22A	chr20	58304715	58372507
RAB22A_chr20_58304715_58372507	0/0	t0106	8067	1	0	0	1	0	0	copy fasta	RAB22A	chr20	58304715	58372507
RAB22A_chr20_58304715_58372507	0/0	t0107	8068	1	1	0	0	0	0	copy fasta	RAB22A	chr20	58304715	58372507
RAB22A_chr20_58304715_58372507	0/0	t0108	8068	1	1	0	0	0	0	copy fasta	RAB22A	chr20	58304715	58372507
RAB22A_chr20_58304715_58372507	0/0	t0109	8069	1	1	0	0	0	0	copy fasta	RAB22A	chr20	58304715	58372507
RAB22A_chr20_58304715_58372507	0/0	t0110	8069	1	1	0	0	0	0	copy fasta	RAB22A	chr20	58304715	58372507
RAB22A_chr20_58304715_58372507	0/0	t0111	8069	1	1	0	0	0	0	copy fasta	RAB22A	chr20	58304715	58372507
RAB22A_chr20_58304715_58372507	0/0	t0112	8069	1	1	0	0	0	0	copy fasta	RAB22A	chr20	58304715	58372507
RAB22A_chr20_58304715_58372507	0/0	t0113	8069	1	1	0	0	0	0	copy fasta	RAB22A	chr20	58304715	58372507
RAB22A_chr20_58304715_58372507	0/0	t0114	8065	1	1	0	0	0	0	copy fasta	RAB22A	chr20	58304715	58372507
RAB22A_chr20_58304715_58372507	0/0	t0115	8068	1	0	0	0	0	1	copy fasta	RAB22A	chr20	58304715	58372507
RAB22A_chr20_58304715_58372507	0/0	t0116	8067	1	0	0	1	0	0	copy fasta	RAB22A	chr20	58304715	58372507
RAB22A_chr20_58304715_58372507	0/0	t0117	8063	1	0	0	1	0	0	copy fasta	RAB22A	chr20	58304715	58372507
RAB22A_chr20_58304715_58372507	0/0	t0118	8067	1	1	0	0	0	0	copy fasta	RAB22A	chr20	58304715	58372507
RAB22A_chr20_58304715_58372507	0/0	t0119	8069	1	1	0	0	0	0	copy fasta	RAB22A	chr20	58304715	58372507
RAB22A_chr20_58304715_58372507	0/0	t0120	8069	1	1	0	0	0	0	copy fasta	RAB22A	chr20	58304715	58372507
RAB22A_chr20_58304715_58372507	0/0	t0121	8067	1	0	0	1	0	0	copy fasta	RAB22A	chr20	58304715	58372507
RAB22A_chr20_58304715_58372507	0/0	t0122	8067	1	1	0	0	0	0	copy fasta	RAB22A	chr20	58304715	58372507
RAB23_chr6_57181992_57227307	1/1	t0001	4117	144	43	26	52	7	14	copy fasta	RAB23	chr6	57181992	57227307
RAB23_chr6_57181992_57227307	0/0	t0002	4115	42	12	8	17	1	4	copy fasta	RAB23	chr6	57181992	57227307
RAB23_chr6_57181992_57227307	0/0	t0003	4117	27	7	5	10	2	3	copy fasta	RAB23	chr6	57181992	57227307
RAB23_chr6_57181992_57227307	0/0	t0004	4121	7	7	0	0	0	0	copy fasta	RAB23	chr6	57181992	57227307
RAB23_chr6_57181992_57227307	0/0	t0005	4117	3	0	3	0	0	0	copy fasta	RAB23	chr6	57181992	57227307
RAB23_chr6_57181992_57227307	0/0	t0006	4117	3	3	0	0	0	0	copy fasta	RAB23	chr6	57181992	57227307
RAB23_chr6_57181992_57227307	0/0	t0007	4117	2	2	0	0	0	0	copy fasta	RAB23	chr6	57181992	57227307
RAB23_chr6_57181992_57227307	0/0	t0008	4117	2	2	0	0	0	0	copy fasta	RAB23	chr6	57181992	57227307
RAB23_chr6_57181992_57227307	0/0	t0009	4117	2	0	2	0	0	0	copy fasta	RAB23	chr6	57181992	57227307
RAB23_chr6_57181992_57227307	0/0	t0010	4117	1	0	0	1	0	0	copy fasta	RAB23	chr6	57181992	57227307
RAB23_chr6_57181992_57227307	0/0	t0011	4115	1	1	0	0	0	0	copy fasta	RAB23	chr6	57181992	57227307
RAB23_chr6_57181992_57227307	0/0	t0012	4119	1	1	0	0	0	0	copy fasta	RAB23	chr6	57181992	57227307
RAB23_chr6_57181992_57227307	0/0	t0013	4117	1	0	0	1	0	0	copy fasta	RAB23	chr6	57181992	57227307
RAB23_chr6_57181992_57227307	0/0	t0014	4117	1	1	0	0	0	0	copy fasta	RAB23	chr6	57181992	57227307
RAB23_chr6_57181992_57227307	0/0	t0015	4117	1	1	0	0	0	0	copy fasta	RAB23	chr6	57181992	57227307
RAB23_chr6_57181992_57227307	0/0	t0016	4117	1	0	1	0	0	0	copy fasta	RAB23	chr6	57181992	57227307
RAB23_chr6_57181992_57227307	0/0	t0017	4117	1	0	0	1	0	0	copy fasta	RAB23	chr6	57181992	57227307
RAB23_chr6_57181992_57227307	0/0	t0018	4119	1	1	0	0	0	0	copy fasta	RAB23	chr6	57181992	57227307
RAB23_chr6_57181992_57227307	0/0	t0019	4117	1	1	0	0	0	0	copy fasta	RAB23	chr6	57181992	57227307
RAB23_chr6_57181992_57227307	0/0	t0020	4115	1	0	1	0	0	0	copy fasta	RAB23	chr6	57181992	57227307
RAB23_chr6_57181992_57227307	0/0	t0021	4119	1	1	0	0	0	0	copy fasta	RAB23	chr6	57181992	57227307
RAB23_chr6_57181992_57227307	0/0	t0022	4117	1	0	0	0	0	1	copy fasta	RAB23	chr6	57181992	57227307
RAB23_chr6_57181992_57227307	0/0	t0023	4115	1	1	0	0	0	0	copy fasta	RAB23	chr6	57181992	57227307
RAB24_chr5_177296198_177308719	0/1	t0001	977	137	63	33	8	12	20	copy fasta	RAB24	chr5	177296198	177308719