JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAB24_chr5_177296198_177308719	1/0	t0002	977	123	5	15	89	3	10	copy fasta	RAB24	chr5	177296198	177308719
RAB24_chr5_177296198_177308719	0/0	t0003	977	121	12	19	76	1	13	copy fasta	RAB24	chr5	177296198	177308719
RAB24_chr5_177296198_177308719	0/0	t0004	976	7	7	0	0	0	0	copy fasta	RAB24	chr5	177296198	177308719
RAB24_chr5_177296198_177308719	0/0	t0005	977	7	7	0	0	0	0	copy fasta	RAB24	chr5	177296198	177308719
RAB24_chr5_177296198_177308719	0/0	t0006	977	3	3	0	0	0	0	copy fasta	RAB24	chr5	177296198	177308719
RAB24_chr5_177296198_177308719	0/0	t0007	977	2	2	0	0	0	0	copy fasta	RAB24	chr5	177296198	177308719
RAB24_chr5_177296198_177308719	0/0	t0008	977	1	0	0	1	0	0	copy fasta	RAB24	chr5	177296198	177308719
RAB24_chr5_177296198_177308719	0/0	t0009	977	1	0	0	0	0	1	copy fasta	RAB24	chr5	177296198	177308719
RAB24_chr5_177296198_177308719	0/0	t0010	1045	1	0	1	0	0	0	copy fasta	RAB24	chr5	177296198	177308719
RAB24_chr5_177296198_177308719	0/0	t0011	977	1	1	0	0	0	0	copy fasta	RAB24	chr5	177296198	177308719
RAB25_chr1_156056160_156075504	1/1	t0001	459	349	88	62	139	12	46	copy fasta	RAB25	chr1	156056160	156075504
RAB25_chr1_156056160_156075504	0/0	t0002	459	1	0	0	1	0	0	copy fasta	RAB25	chr1	156056160	156075504
RAB26_chr16_2143625_2159165	0/0	t0001	907	262	36	48	131	12	35	copy fasta	RAB26	chr16	2143625	2159165
RAB26_chr16_2143625_2159165	0/1	t0002	904	53	37	11	0	2	2	copy fasta	RAB26	chr16	2143625	2159165
RAB26_chr16_2143625_2159165	0/0	t0003	910	27	4	6	13	0	4	copy fasta	RAB26	chr16	2143625	2159165
RAB26_chr16_2143625_2159165	0/0	t0004	901	14	12	2	0	0	0	copy fasta	RAB26	chr16	2143625	2159165
RAB26_chr16_2143625_2159165	0/0	t0005	913	9	0	2	4	1	2	copy fasta	RAB26	chr16	2143625	2159165
RAB26_chr16_2143625_2159165	0/0	t0006	904	3	3	0	0	0	0	copy fasta	RAB26	chr16	2143625	2159165
RAB26_chr16_2143625_2159165	0/0	t0007	889	3	0	3	0	0	0	copy fasta	RAB26	chr16	2143625	2159165
RAB26_chr16_2143625_2159165	0/0	t0008	904	2	2	0	0	0	0	copy fasta	RAB26	chr16	2143625	2159165
RAB26_chr16_2143625_2159165	1/0	t0009	904	2	0	0	0	1	0	copy fasta	RAB26	chr16	2143625	2159165
RAB26_chr16_2143625_2159165	0/0	t0010	907	2	0	0	2	0	0	copy fasta	RAB26	chr16	2143625	2159165
RAB26_chr16_2143625_2159165	0/0	t0011	904	1	1	0	0	0	0	copy fasta	RAB26	chr16	2143625	2159165
RAB26_chr16_2143625_2159165	0/0	t0012	886	1	1	0	0	0	0	copy fasta	RAB26	chr16	2143625	2159165
RAB26_chr16_2143625_2159165	0/0	t0013	904	1	1	0	0	0	0	copy fasta	RAB26	chr16	2143625	2159165
RAB26_chr16_2143625_2159165	0/0	t0014	904	1	1	0	0	0	0	copy fasta	RAB26	chr16	2143625	2159165
RAB26_chr16_2143625_2159165	0/0	t0015	907	1	0	0	0	0	1	copy fasta	RAB26	chr16	2143625	2159165
RAB26_chr16_2143625_2159165	0/0	t0016	907	1	0	0	1	0	0	copy fasta	RAB26	chr16	2143625	2159165
RAB26_chr16_2143625_2159165	0/0	t0017	907	1	0	0	1	0	0	copy fasta	RAB26	chr16	2143625	2159165
RAB27A_chr15_55197966_55294813	1/1	t0001	2782	159	17	42	70	9	19	copy fasta	RAB27A	chr15	55197966	55294813
RAB27A_chr15_55197966_55294813	0/0	t0002	2785	53	17	9	18	3	6	copy fasta	RAB27A	chr15	55197966	55294813
RAB27A_chr15_55197966_55294813	0/0	t0003	2784	26	19	3	0	1	3	copy fasta	RAB27A	chr15	55197966	55294813
RAB27A_chr15_55197966_55294813	0/0	t0004	2783	15	0	1	13	0	1	copy fasta	RAB27A	chr15	55197966	55294813
RAB27A_chr15_55197966_55294813	0/0	t0005	2782	10	0	3	0	1	6	copy fasta	RAB27A	chr15	55197966	55294813
RAB27A_chr15_55197966_55294813	0/0	t0006	2783	8	8	0	0	0	0	copy fasta	RAB27A	chr15	55197966	55294813
RAB27A_chr15_55197966_55294813	0/0	t0007	2781	5	1	1	2	1	0	copy fasta	RAB27A	chr15	55197966	55294813
RAB27A_chr15_55197966_55294813	0/0	t0008	2785	5	5	0	0	0	0	copy fasta	RAB27A	chr15	55197966	55294813
RAB27A_chr15_55197966_55294813	0/0	t0009	2783	4	1	1	2	0	0	copy fasta	RAB27A	chr15	55197966	55294813
RAB27A_chr15_55197966_55294813	0/0	t0010	2785	4	4	0	0	0	0	copy fasta	RAB27A	chr15	55197966	55294813
RAB27A_chr15_55197966_55294813	0/0	t0011	2784	4	4	0	0	0	0	copy fasta	RAB27A	chr15	55197966	55294813
RAB27A_chr15_55197966_55294813	0/0	t0012	2784	3	3	0	0	0	0	copy fasta	RAB27A	chr15	55197966	55294813
RAB27A_chr15_55197966_55294813	0/0	t0013	2783	2	2	0	0	0	0	copy fasta	RAB27A	chr15	55197966	55294813
RAB27A_chr15_55197966_55294813	0/0	t0014	2781	2	0	1	0	0	1	copy fasta	RAB27A	chr15	55197966	55294813
RAB27A_chr15_55197966_55294813	0/0	t0015	2784	2	2	0	0	0	0	copy fasta	RAB27A	chr15	55197966	55294813
RAB27A_chr15_55197966_55294813	0/0	t0016	2784	2	0	1	1	0	0	copy fasta	RAB27A	chr15	55197966	55294813
RAB27A_chr15_55197966_55294813	0/0	t0017	2783	1	0	0	1	0	0	copy fasta	RAB27A	chr15	55197966	55294813
RAB27A_chr15_55197966_55294813	0/0	t0018	2782	1	0	0	1	0	0	copy fasta	RAB27A	chr15	55197966	55294813
RAB27A_chr15_55197966_55294813	0/0	t0019	2782	1	1	0	0	0	0	copy fasta	RAB27A	chr15	55197966	55294813
RAB27A_chr15_55197966_55294813	0/0	t0020	2782	1	0	0	1	0	0	copy fasta	RAB27A	chr15	55197966	55294813
RAB27A_chr15_55197966_55294813	0/0	t0021	2782	1	0	0	0	1	0	copy fasta	RAB27A	chr15	55197966	55294813