JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAB27A_chr15_55197966_55294813	0/0	t0022	2780	1	0	1	0	0	0	copy fasta	RAB27A	chr15	55197966	55294813
RAB27A_chr15_55197966_55294813	0/0	t0023	2783	1	0	1	0	0	0	copy fasta	RAB27A	chr15	55197966	55294813
RAB27A_chr15_55197966_55294813	0/0	t0024	2782	1	1	0	0	0	0	copy fasta	RAB27A	chr15	55197966	55294813
RAB27A_chr15_55197966_55294813	0/0	t0025	2780	1	1	0	0	0	0	copy fasta	RAB27A	chr15	55197966	55294813
RAB27A_chr15_55197966_55294813	0/0	t0026	2782	1	0	0	1	0	0	copy fasta	RAB27A	chr15	55197966	55294813
RAB27A_chr15_55197966_55294813	0/0	t0027	2785	1	1	0	0	0	0	copy fasta	RAB27A	chr15	55197966	55294813
RAB27A_chr15_55197966_55294813	0/0	t0028	2785	1	1	0	0	0	0	copy fasta	RAB27A	chr15	55197966	55294813
RAB27A_chr15_55197966_55294813	0/0	t0029	2785	1	1	0	0	0	0	copy fasta	RAB27A	chr15	55197966	55294813
RAB27A_chr15_55197966_55294813	0/0	t0030	2784	1	1	0	0	0	0	copy fasta	RAB27A	chr15	55197966	55294813
RAB27A_chr15_55197966_55294813	0/0	t0031	2785	1	0	0	1	0	0	copy fasta	RAB27A	chr15	55197966	55294813
RAB27A_chr15_55197966_55294813	0/0	t0032	2783	1	0	0	1	0	0	copy fasta	RAB27A	chr15	55197966	55294813
RAB27B_chr18_54823477_54900516	0/1	t0001	6343	141	24	31	67	1	17	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	t0002	6343	66	2	15	38	1	10	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	t0003	6343	16	0	10	0	2	4	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	1/0	t0004	6347	13	12	0	0	0	0	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	t0005	6343	11	0	8	0	2	1	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	t0006	6343	9	8	1	0	0	0	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	t0007	6343	8	6	1	0	0	1	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	t0008	6343	8	8	0	0	0	0	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	t0009	6343	7	1	4	1	0	1	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	t0010	6342	7	3	0	4	0	0	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	t0011	6343	4	0	0	4	0	0	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	t0012	6343	4	0	0	4	0	0	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	t0013	6343	2	0	0	0	0	2	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	t0014	6343	2	0	0	0	0	2	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	t0015	6343	2	0	0	0	1	1	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	t0016	6343	2	2	0	0	0	0	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	t0017	6343	2	0	0	2	0	0	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	t0018	6184	2	2	0	0	0	0	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	t0019	6343	1	1	0	0	0	0	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	t0020	6343	1	1	0	0	0	0	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	t0021	6343	1	1	0	0	0	0	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	t0022	6343	1	0	0	0	1	0	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	t0023	6343	1	0	0	1	0	0	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	t0024	6347	1	1	0	0	0	0	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	t0025	6347	1	1	0	0	0	0	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	t0026	6347	1	1	0	0	0	0	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	t0027	6343	1	0	0	1	0	0	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	t0028	6343	1	0	1	0	0	0	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	t0029	6343	1	1	0	0	0	0	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	t0030	6342	1	0	1	0	0	0	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	t0031	6342	1	1	0	0	0	0	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	t0032	6343	1	0	1	0	0	0	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	t0033	6343	1	1	0	0	0	0	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	t0034	6343	1	1	0	0	0	0	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	t0035	6343	1	0	0	1	0	0	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	t0036	6343	1	0	1	0	0	0	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	t0037	6343	1	0	0	1	0	0	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	t0038	6343	1	0	0	1	0	0	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	t0039	6343	1	0	0	1	0	0	copy fasta	RAB27B	chr18	54823477	54900516