JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAB27B_chr18_54823477_54900516	0/0	t0040	6343	1	1	0	0	0	0	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	t0041	6343	1	1	0	0	0	0	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	t0042	6343	1	1	0	0	0	0	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	t0043	6343	1	1	0	0	0	0	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	t0044	6343	1	1	0	0	0	0	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	t0045	6343	1	0	0	0	0	1	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	t0046	6347	1	1	0	0	0	0	copy fasta	RAB27B	chr18	54823477	54900516
RAB28_chr4_13362724_13489340	1/1	t0001	1123	170	28	32	68	10	30	copy fasta	RAB28	chr4	13362724	13489340
RAB28_chr4_13362724_13489340	0/0	t0002	1123	8	7	1	0	0	0	copy fasta	RAB28	chr4	13362724	13489340
RAB28_chr4_13362724_13489340	0/0	t0003	1123	5	5	0	0	0	0	copy fasta	RAB28	chr4	13362724	13489340
RAB28_chr4_13362724_13489340	0/0	t0004	1123	4	2	0	0	0	2	copy fasta	RAB28	chr4	13362724	13489340
RAB28_chr4_13362724_13489340	0/0	t0005	1123	3	0	1	0	2	0	copy fasta	RAB28	chr4	13362724	13489340
RAB28_chr4_13362724_13489340	0/0	t0006	1123	2	2	0	0	0	0	copy fasta	RAB28	chr4	13362724	13489340
RAB28_chr4_13362724_13489340	0/0	t0007	1123	2	2	0	0	0	0	copy fasta	RAB28	chr4	13362724	13489340
RAB28_chr4_13362724_13489340	0/0	t0008	1123	2	0	2	0	0	0	copy fasta	RAB28	chr4	13362724	13489340
RAB29_chr1_205762986_205780482	0/0	t0001	2697	90	1	7	65	2	15	copy fasta	RAB29	chr1	205762986	205780482
RAB29_chr1_205762986_205780482	1/0	t0002	2697	76	28	10	29	0	8	copy fasta	RAB29	chr1	205762986	205780482
RAB29_chr1_205762986_205780482	0/0	t0003	2694	67	4	17	35	2	9	copy fasta	RAB29	chr1	205762986	205780482
RAB29_chr1_205762986_205780482	0/0	t0004	2694	46	1	5	37	0	3	copy fasta	RAB29	chr1	205762986	205780482
RAB29_chr1_205762986_205780482	0/0	t0005	2697	36	16	14	0	3	3	copy fasta	RAB29	chr1	205762986	205780482
RAB29_chr1_205762986_205780482	0/0	t0006	2697	14	10	3	0	0	1	copy fasta	RAB29	chr1	205762986	205780482
RAB29_chr1_205762986_205780482	0/0	t0007	2697	11	10	1	0	0	0	copy fasta	RAB29	chr1	205762986	205780482
RAB29_chr1_205762986_205780482	0/1	t0008	2694	10	0	5	0	3	1	copy fasta	RAB29	chr1	205762986	205780482
RAB29_chr1_205762986_205780482	0/0	t0009	2694	8	0	5	0	3	0	copy fasta	RAB29	chr1	205762986	205780482
RAB29_chr1_205762986_205780482	0/0	t0010	2697	8	1	5	0	2	0	copy fasta	RAB29	chr1	205762986	205780482
RAB29_chr1_205762986_205780482	0/0	t0011	2697	7	7	0	0	0	0	copy fasta	RAB29	chr1	205762986	205780482
RAB29_chr1_205762986_205780482	0/0	t0012	2697	7	7	0	0	0	0	copy fasta	RAB29	chr1	205762986	205780482
RAB29_chr1_205762986_205780482	0/0	t0013	2698	4	3	0	1	0	0	copy fasta	RAB29	chr1	205762986	205780482
RAB29_chr1_205762986_205780482	0/0	t0014	2697	4	1	3	0	0	0	copy fasta	RAB29	chr1	205762986	205780482
RAB29_chr1_205762986_205780482	0/0	t0015	2697	3	0	3	0	0	0	copy fasta	RAB29	chr1	205762986	205780482
RAB29_chr1_205762986_205780482	0/0	t0016	2697	2	0	1	0	0	1	copy fasta	RAB29	chr1	205762986	205780482
RAB29_chr1_205762986_205780482	0/0	t0017	2697	2	0	0	2	0	0	copy fasta	RAB29	chr1	205762986	205780482
RAB29_chr1_205762986_205780482	0/0	t0018	2694	2	2	0	0	0	0	copy fasta	RAB29	chr1	205762986	205780482
RAB29_chr1_205762986_205780482	0/0	t0019	2697	2	2	0	0	0	0	copy fasta	RAB29	chr1	205762986	205780482
RAB29_chr1_205762986_205780482	0/0	t0020	2697	2	2	0	0	0	0	copy fasta	RAB29	chr1	205762986	205780482
RAB29_chr1_205762986_205780482	0/0	t0021	2697	1	1	0	0	0	0	copy fasta	RAB29	chr1	205762986	205780482
RAB29_chr1_205762986_205780482	0/0	t0022	2697	1	1	0	0	0	0	copy fasta	RAB29	chr1	205762986	205780482
RAB29_chr1_205762986_205780482	0/0	t0023	2693	1	0	0	1	0	0	copy fasta	RAB29	chr1	205762986	205780482
RAB29_chr1_205762986_205780482	0/0	t0024	2694	1	1	0	0	0	0	copy fasta	RAB29	chr1	205762986	205780482
RAB29_chr1_205762986_205780482	0/0	t0025	2694	1	0	0	0	0	1	copy fasta	RAB29	chr1	205762986	205780482
RAB29_chr1_205762986_205780482	0/0	t0026	2681	1	0	0	1	0	0	copy fasta	RAB29	chr1	205762986	205780482
RAB29_chr1_205762986_205780482	0/0	t0027	2697	1	1	0	0	0	0	copy fasta	RAB29	chr1	205762986	205780482
RAB29_chr1_205762986_205780482	0/0	t0028	2697	1	0	0	0	1	0	copy fasta	RAB29	chr1	205762986	205780482
RAB29_chr1_205762986_205780482	0/0	t0029	2696	1	0	1	0	0	0	copy fasta	RAB29	chr1	205762986	205780482
RAB29_chr1_205762986_205780482	0/0	t0030	2697	1	0	0	0	0	1	copy fasta	RAB29	chr1	205762986	205780482
RAB29_chr1_205762986_205780482	0/0	t0031	2696	1	0	0	1	0	0	copy fasta	RAB29	chr1	205762986	205780482
RAB29_chr1_205762986_205780482	0/0	t0032	2697	1	0	0	0	0	1	copy fasta	RAB29	chr1	205762986	205780482
RAB29_chr1_205762986_205780482	0/0	t0033	2698	1	1	0	0	0	0	copy fasta	RAB29	chr1	205762986	205780482
RAB2A_chr8_60511987_60628644	1/1	t0001	3097	90	1	19	54	5	9	copy fasta	RAB2A	chr8	60511987	60628644
RAB2A_chr8_60511987_60628644	0/0	t0002	3097	90	13	20	45	3	9	copy fasta	RAB2A	chr8	60511987	60628644