JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAB2A_chr8_60511987_60628644	0/0	t0003	3097	77	14	8	43	2	10	copy fasta	RAB2A	chr8	60511987	60628644
RAB2A_chr8_60511987_60628644	0/0	t0004	3097	31	27	0	0	0	4	copy fasta	RAB2A	chr8	60511987	60628644
RAB2A_chr8_60511987_60628644	0/0	t0005	3097	28	20	4	3	0	1	copy fasta	RAB2A	chr8	60511987	60628644
RAB2A_chr8_60511987_60628644	0/0	t0006	3097	5	0	0	5	0	0	copy fasta	RAB2A	chr8	60511987	60628644
RAB2A_chr8_60511987_60628644	0/0	t0007	3097	5	0	1	3	0	1	copy fasta	RAB2A	chr8	60511987	60628644
RAB2A_chr8_60511987_60628644	0/0	t0008	3097	5	5	0	0	0	0	copy fasta	RAB2A	chr8	60511987	60628644
RAB2A_chr8_60511987_60628644	0/0	t0009	3097	4	0	0	4	0	0	copy fasta	RAB2A	chr8	60511987	60628644
RAB2A_chr8_60511987_60628644	0/0	t0010	3097	4	0	0	4	0	0	copy fasta	RAB2A	chr8	60511987	60628644
RAB2A_chr8_60511987_60628644	0/0	t0011	3097	3	0	0	3	0	0	copy fasta	RAB2A	chr8	60511987	60628644
RAB2A_chr8_60511987_60628644	0/0	t0012	3097	2	2	0	0	0	0	copy fasta	RAB2A	chr8	60511987	60628644
RAB2A_chr8_60511987_60628644	0/0	t0013	3097	2	1	1	0	0	0	copy fasta	RAB2A	chr8	60511987	60628644
RAB2A_chr8_60511987_60628644	0/0	t0014	3097	1	1	0	0	0	0	copy fasta	RAB2A	chr8	60511987	60628644
RAB2A_chr8_60511987_60628644	0/0	t0015	3097	1	1	0	0	0	0	copy fasta	RAB2A	chr8	60511987	60628644
RAB2A_chr8_60511987_60628644	0/0	t0016	3097	1	1	0	0	0	0	copy fasta	RAB2A	chr8	60511987	60628644
RAB2A_chr8_60511987_60628644	0/0	t0017	3097	1	0	1	0	0	0	copy fasta	RAB2A	chr8	60511987	60628644
RAB2A_chr8_60511987_60628644	0/0	t0018	3097	1	1	0	0	0	0	copy fasta	RAB2A	chr8	60511987	60628644
RAB2A_chr8_60511987_60628644	0/0	t0019	3097	1	1	0	0	0	0	copy fasta	RAB2A	chr8	60511987	60628644
RAB2A_chr8_60511987_60628644	0/0	t0020	3097	1	1	0	0	0	0	copy fasta	RAB2A	chr8	60511987	60628644
RAB2A_chr8_60511987_60628644	0/0	t0021	3097	1	0	0	0	0	1	copy fasta	RAB2A	chr8	60511987	60628644
RAB2A_chr8_60511987_60628644	0/0	t0022	3097	1	1	0	0	0	0	copy fasta	RAB2A	chr8	60511987	60628644
RAB2A_chr8_60511987_60628644	0/0	t0023	3097	1	0	0	1	0	0	copy fasta	RAB2A	chr8	60511987	60628644
RAB2A_chr8_60511987_60628644	0/0	t0024	3097	1	0	0	0	0	1	copy fasta	RAB2A	chr8	60511987	60628644
RAB2A_chr8_60511987_60628644	0/0	t0025	3097	1	0	0	1	0	0	copy fasta	RAB2A	chr8	60511987	60628644
RAB2B_chr14_21454020_21481959	0/1	t0001	2267	116	2	18	70	4	21	copy fasta	RAB2B	chr14	21454020	21481959
RAB2B_chr14_21454020_21481959	0/0	t0002	2266	102	22	9	63	3	5	copy fasta	RAB2B	chr14	21454020	21481959
RAB2B_chr14_21454020_21481959	0/0	t0003	2265	35	13	10	8	1	3	copy fasta	RAB2B	chr14	21454020	21481959
RAB2B_chr14_21454020_21481959	0/0	t0004	2264	31	0	12	15	0	4	copy fasta	RAB2B	chr14	21454020	21481959
RAB2B_chr14_21454020_21481959	0/0	t0005	2265	31	10	2	16	1	2	copy fasta	RAB2B	chr14	21454020	21481959
RAB2B_chr14_21454020_21481959	0/0	t0006	2266	12	12	0	0	0	0	copy fasta	RAB2B	chr14	21454020	21481959
RAB2B_chr14_21454020_21481959	0/0	t0007	2266	11	11	0	0	0	0	copy fasta	RAB2B	chr14	21454020	21481959
RAB2B_chr14_21454020_21481959	1/0	t0008	2264	10	0	4	1	1	3	copy fasta	RAB2B	chr14	21454020	21481959
RAB2B_chr14_21454020_21481959	0/0	t0009	2266	7	2	1	2	2	0	copy fasta	RAB2B	chr14	21454020	21481959
RAB2B_chr14_21454020_21481959	0/0	t0010	2264	6	1	3	0	2	0	copy fasta	RAB2B	chr14	21454020	21481959
RAB2B_chr14_21454020_21481959	0/0	t0011	2266	6	4	1	0	0	1	copy fasta	RAB2B	chr14	21454020	21481959
RAB2B_chr14_21454020_21481959	0/0	t0012	2267	4	0	1	0	1	2	copy fasta	RAB2B	chr14	21454020	21481959
RAB2B_chr14_21454020_21481959	0/0	t0013	2268	4	0	1	2	0	1	copy fasta	RAB2B	chr14	21454020	21481959
RAB2B_chr14_21454020_21481959	0/0	t0014	2267	3	0	0	3	0	0	copy fasta	RAB2B	chr14	21454020	21481959
RAB2B_chr14_21454020_21481959	0/0	t0015	2266	3	3	0	0	0	0	copy fasta	RAB2B	chr14	21454020	21481959
RAB2B_chr14_21454020_21481959	0/0	t0016	2265	2	2	0	0	0	0	copy fasta	RAB2B	chr14	21454020	21481959
RAB2B_chr14_21454020_21481959	0/0	t0017	2264	2	2	0	0	0	0	copy fasta	RAB2B	chr14	21454020	21481959
RAB2B_chr14_21454020_21481959	0/0	t0018	2266	2	0	1	0	0	1	copy fasta	RAB2B	chr14	21454020	21481959
RAB2B_chr14_21454020_21481959	0/0	t0019	2267	2	0	2	0	0	0	copy fasta	RAB2B	chr14	21454020	21481959
RAB2B_chr14_21454020_21481959	0/0	t0020	2266	2	2	0	0	0	0	copy fasta	RAB2B	chr14	21454020	21481959
RAB2B_chr14_21454020_21481959	0/0	t0021	2265	2	0	0	2	0	0	copy fasta	RAB2B	chr14	21454020	21481959
RAB2B_chr14_21454020_21481959	0/0	t0022	2265	1	0	1	0	0	0	copy fasta	RAB2B	chr14	21454020	21481959
RAB2B_chr14_21454020_21481959	0/0	t0023	2266	1	0	0	0	0	1	copy fasta	RAB2B	chr14	21454020	21481959
RAB2B_chr14_21454020_21481959	0/0	t0024	2264	1	0	1	0	0	0	copy fasta	RAB2B	chr14	21454020	21481959
RAB2B_chr14_21454020_21481959	0/0	t0025	2265	1	0	1	0	0	0	copy fasta	RAB2B	chr14	21454020	21481959
RAB2B_chr14_21454020_21481959	0/0	t0026	2266	1	1	0	0	0	0	copy fasta	RAB2B	chr14	21454020	21481959
RAB2B_chr14_21454020_21481959	0/0	t0027	2264	1	0	0	1	0	0	copy fasta	RAB2B	chr14	21454020	21481959