JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAB2B_chr14_21454020_21481959	0/0	t0028	2264	1	0	1	0	0	0	copy fasta	RAB2B	chr14	21454020	21481959
RAB2B_chr14_21454020_21481959	0/0	t0029	2265	1	0	0	1	0	0	copy fasta	RAB2B	chr14	21454020	21481959
RAB2B_chr14_21454020_21481959	0/0	t0030	2265	1	1	0	0	0	0	copy fasta	RAB2B	chr14	21454020	21481959
RAB2B_chr14_21454020_21481959	0/0	t0031	2266	1	0	0	0	0	1	copy fasta	RAB2B	chr14	21454020	21481959
RAB2B_chr14_21454020_21481959	0/0	t0032	2266	1	1	0	0	0	0	copy fasta	RAB2B	chr14	21454020	21481959
RAB2B_chr14_21454020_21481959	0/0	t0033	2266	1	1	0	0	0	0	copy fasta	RAB2B	chr14	21454020	21481959
RAB2B_chr14_21454020_21481959	0/0	t0034	2266	1	1	0	0	0	0	copy fasta	RAB2B	chr14	21454020	21481959
RAB2B_chr14_21454020_21481959	0/0	t0035	2266	1	0	1	0	0	0	copy fasta	RAB2B	chr14	21454020	21481959
RAB2B_chr14_21454020_21481959	0/0	t0036	2267	1	0	0	1	0	0	copy fasta	RAB2B	chr14	21454020	21481959
RAB2B_chr14_21454020_21481959	0/0	t0037	2267	1	0	0	0	0	1	copy fasta	RAB2B	chr14	21454020	21481959
RAB2B_chr14_21454020_21481959	0/0	t0038	2267	1	0	0	0	1	0	copy fasta	RAB2B	chr14	21454020	21481959
RAB2B_chr14_21454020_21481959	0/0	t0039	2264	1	1	0	0	0	0	copy fasta	RAB2B	chr14	21454020	21481959
RAB2B_chr14_21454020_21481959	0/0	t0040	2267	1	0	0	1	0	0	copy fasta	RAB2B	chr14	21454020	21481959
RAB30_chr11_82968133_83076897	1/1	t0001	9248	117	17	18	67	4	9	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0002	9252	46	2	12	24	2	6	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0003	9248	19	1	0	14	0	4	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0004	9246	16	14	1	0	0	1	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0005	9248	9	9	0	0	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0006	9250	9	0	5	0	1	3	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0007	9249	6	5	1	0	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0008	9253	5	2	2	1	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0009	9249	5	4	1	0	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0010	9248	4	0	0	1	0	3	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0011	9246	4	3	1	0	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0012	9252	3	0	0	3	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0013	9248	3	0	0	3	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0014	9249	3	3	0	0	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0015	9249	3	0	0	2	0	1	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0016	9248	3	3	0	0	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0017	9248	3	0	2	0	1	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0018	9252	3	1	1	0	0	1	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0019	9246	2	0	0	0	0	2	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0020	9251	2	0	2	0	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0021	9252	2	0	0	2	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0022	9249	2	0	1	1	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0023	9249	2	2	0	0	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0024	9246	2	0	0	0	0	2	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0025	9248	2	0	0	1	0	1	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0026	9248	2	0	0	1	1	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0027	9248	2	1	1	0	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0028	9252	1	0	0	0	0	1	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0029	9250	1	1	0	0	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0030	9252	1	1	0	0	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0031	9250	1	1	0	0	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0032	9251	1	0	0	1	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0033	9250	1	1	0	0	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0034	9250	1	1	0	0	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0035	9250	1	0	0	1	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0036	9252	1	0	0	1	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0037	9252	1	0	0	0	0	1	copy fasta	RAB30	chr11	82968133	83076897