JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAB30_chr11_82968133_83076897	0/0	t0038	9264	1	0	1	0	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0039	9252	1	0	1	0	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0040	9252	1	0	0	0	1	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0041	9249	1	1	0	0	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0042	9248	1	1	0	0	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0043	9249	1	1	0	0	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0044	9246	1	1	0	0	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0045	9248	1	0	1	0	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0046	9247	1	0	0	0	0	1	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0047	9249	1	1	0	0	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0048	9270	1	1	0	0	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0049	9230	1	1	0	0	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0050	9252	1	0	0	1	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0051	9253	1	1	0	0	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0052	9248	1	0	0	1	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0053	9248	1	0	0	1	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0054	9248	1	0	0	1	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0055	9248	1	0	0	1	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0056	9248	1	0	1	0	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0057	9248	1	0	0	1	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0058	9248	1	0	0	0	0	1	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0059	9248	1	0	0	1	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0060	9248	1	0	0	1	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0061	9248	1	1	0	0	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0062	9248	1	0	0	0	0	1	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0063	9248	1	0	1	0	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0064	9248	1	0	0	0	0	1	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0065	9248	1	0	1	0	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0066	9248	1	0	1	0	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0067	9250	1	0	1	0	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0068	9248	1	0	1	0	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0069	9250	1	0	0	0	0	1	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0070	9251	1	0	0	1	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0071	9250	1	0	1	0	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0072	9253	1	0	1	0	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0073	9248	1	0	1	0	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0074	9248	1	1	0	0	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0075	9248	1	1	0	0	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	t0076	9246	1	1	0	0	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB31_chr18_9703301_9867551	0/1	t0001	3334	129	33	27	51	4	13	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	1/0	t0002	3332	69	9	25	23	5	6	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	t0003	3333	14	0	0	6	1	7	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	t0004	3331	14	2	1	10	1	0	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	t0005	3333	11	2	0	6	0	3	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	t0006	3332	10	4	3	0	2	1	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	t0007	3333	8	0	4	0	1	3	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	t0008	3333	5	5	0	0	0	0	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	t0009	3331	5	0	4	0	0	1	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	t0010	3334	4	0	0	0	0	4	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	t0011	3333	3	0	0	0	0	3	copy fasta	RAB31	chr18	9703301	9867551