JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAB31_chr18_9703301_9867551	0/0	t0012	3335	3	0	1	1	0	1	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	t0013	3333	3	3	0	0	0	0	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	t0014	3333	3	2	1	0	0	0	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	t0015	3334	2	2	0	0	0	0	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	t0016	3333	2	0	0	2	0	0	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	t0017	3333	2	2	0	0	0	0	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	t0018	3333	2	2	0	0	0	0	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	t0019	3334	2	2	0	0	0	0	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	t0020	3332	1	1	0	0	0	0	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	t0021	3334	1	1	0	0	0	0	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	t0022	3333	1	0	0	0	0	1	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	t0023	3334	1	0	0	0	0	1	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	t0024	3334	1	0	0	1	0	0	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	t0025	3332	1	1	0	0	0	0	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	t0026	3334	1	0	0	1	0	0	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	t0027	3334	1	0	0	1	0	0	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	t0028	3333	1	1	0	0	0	0	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	t0029	3333	1	0	0	0	0	1	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	t0030	3335	1	0	0	0	0	1	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	t0031	3334	1	1	0	0	0	0	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	t0032	3334	1	1	0	0	0	0	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	t0033	3334	1	0	0	1	0	0	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	t0034	3334	1	0	0	0	0	1	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	t0035	3333	1	1	0	0	0	0	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	t0036	3334	1	1	0	0	0	0	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	t0037	3332	1	1	0	0	0	0	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	t0038	3333	1	0	1	0	0	0	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	t0039	3332	1	0	0	1	0	0	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	t0040	3331	1	0	0	1	0	0	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	t0041	3332	1	1	0	0	0	0	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	t0042	3330	1	0	0	1	0	0	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	t0043	3332	1	1	0	0	0	0	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	t0044	3334	1	1	0	0	0	0	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	t0045	3334	1	0	1	0	0	0	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	t0046	3332	1	1	0	0	0	0	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	t0047	3332	1	1	0	0	0	0	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	t0048	3333	1	1	0	0	0	0	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	t0049	3334	1	0	0	0	0	1	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	t0050	3321	1	1	0	0	0	0	copy fasta	RAB31	chr18	9703301	9867551
RAB32_chr6_146538833_146559953	1/1	t0001	388	407	91	72	190	12	40	copy fasta	RAB32	chr6	146538833	146559953
RAB32_chr6_146538833_146559953	0/0	t0002	388	5	0	0	5	0	0	copy fasta	RAB32	chr6	146538833	146559953
RAB32_chr6_146538833_146559953	0/0	t0003	388	1	0	0	1	0	0	copy fasta	RAB32	chr6	146538833	146559953
RAB32_chr6_146538833_146559953	0/0	t0004	388	1	1	0	0	0	0	copy fasta	RAB32	chr6	146538833	146559953
RAB33A_chrX_130166962_130189870	1/1	t0001	232	315	78	53	137	13	32	copy fasta	RAB33A	chrX	130166962	130189870
RAB33A_chrX_130166962_130189870	0/0	t0002	232	1	0	0	1	0	0	copy fasta	RAB33A	chrX	130166962	130189870
RAB33B_chr4_139449121_139481609	1/1	t0001	3559	257	41	37	137	10	30	copy fasta	RAB33B	chr4	139449121	139481609
RAB33B_chr4_139449121_139481609	0/0	t0002	3557	33	6	8	10	3	6	copy fasta	RAB33B	chr4	139449121	139481609
RAB33B_chr4_139449121_139481609	0/0	t0003	3557	24	5	3	15	0	1	copy fasta	RAB33B	chr4	139449121	139481609
RAB33B_chr4_139449121_139481609	0/0	t0004	3560	13	11	2	0	0	0	copy fasta	RAB33B	chr4	139449121	139481609
RAB33B_chr4_139449121_139481609	0/0	t0005	3557	10	10	0	0	0	0	copy fasta	RAB33B	chr4	139449121	139481609