JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAB33B_chr4_139449121_139481609	0/0	t0006	3559	6	6	0	0	0	0	copy fasta	RAB33B	chr4	139449121	139481609
RAB33B_chr4_139449121_139481609	0/0	t0007	3559	6	6	0	0	0	0	copy fasta	RAB33B	chr4	139449121	139481609
RAB33B_chr4_139449121_139481609	0/0	t0008	3560	6	1	0	4	0	1	copy fasta	RAB33B	chr4	139449121	139481609
RAB33B_chr4_139449121_139481609	0/0	t0009	3559	6	0	3	0	2	1	copy fasta	RAB33B	chr4	139449121	139481609
RAB33B_chr4_139449121_139481609	0/0	t0010	3558	5	0	0	5	0	0	copy fasta	RAB33B	chr4	139449121	139481609
RAB33B_chr4_139449121_139481609	0/0	t0011	3557	4	3	1	0	0	0	copy fasta	RAB33B	chr4	139449121	139481609
RAB33B_chr4_139449121_139481609	0/0	t0012	3557	4	0	4	0	0	0	copy fasta	RAB33B	chr4	139449121	139481609
RAB33B_chr4_139449121_139481609	0/0	t0013	3559	3	0	1	0	1	1	copy fasta	RAB33B	chr4	139449121	139481609
RAB33B_chr4_139449121_139481609	0/0	t0014	3560	2	0	1	0	0	1	copy fasta	RAB33B	chr4	139449121	139481609
RAB33B_chr4_139449121_139481609	0/0	t0015	3559	2	0	0	2	0	0	copy fasta	RAB33B	chr4	139449121	139481609
RAB33B_chr4_139449121_139481609	0/0	t0016	3559	2	0	0	2	0	0	copy fasta	RAB33B	chr4	139449121	139481609
RAB33B_chr4_139449121_139481609	0/0	t0017	3559	1	1	0	0	0	0	copy fasta	RAB33B	chr4	139449121	139481609
RAB33B_chr4_139449121_139481609	0/0	t0018	3559	1	1	0	0	0	0	copy fasta	RAB33B	chr4	139449121	139481609
RAB33B_chr4_139449121_139481609	0/0	t0019	3559	1	0	0	1	0	0	copy fasta	RAB33B	chr4	139449121	139481609
RAB33B_chr4_139449121_139481609	0/0	t0020	3559	1	0	0	1	0	0	copy fasta	RAB33B	chr4	139449121	139481609
RAB33B_chr4_139449121_139481609	0/0	t0021	3559	1	0	1	0	0	0	copy fasta	RAB33B	chr4	139449121	139481609
RAB33B_chr4_139449121_139481609	0/0	t0022	3559	1	1	0	0	0	0	copy fasta	RAB33B	chr4	139449121	139481609
RAB33B_chr4_139449121_139481609	0/0	t0023	3559	1	0	1	0	0	0	copy fasta	RAB33B	chr4	139449121	139481609
RAB33B_chr4_139449121_139481609	0/0	t0024	3559	1	1	0	0	0	0	copy fasta	RAB33B	chr4	139449121	139481609
RAB33B_chr4_139449121_139481609	0/0	t0025	3559	1	0	0	1	0	0	copy fasta	RAB33B	chr4	139449121	139481609
RAB33B_chr4_139449121_139481609	0/0	t0026	3560	1	0	0	0	0	1	copy fasta	RAB33B	chr4	139449121	139481609
RAB33B_chr4_139449121_139481609	0/0	t0027	3558	1	0	0	0	1	0	copy fasta	RAB33B	chr4	139449121	139481609
RAB33B_chr4_139449121_139481609	0/0	t0028	3559	1	0	0	0	1	0	copy fasta	RAB33B	chr4	139449121	139481609
RAB33B_chr4_139449121_139481609	0/0	t0029	3557	1	1	0	0	0	0	copy fasta	RAB33B	chr4	139449121	139481609
RAB33B_chr4_139449121_139481609	0/0	t0030	3557	1	1	0	0	0	0	copy fasta	RAB33B	chr4	139449121	139481609
RAB33B_chr4_139449121_139481609	0/0	t0031	3558	1	1	0	0	0	0	copy fasta	RAB33B	chr4	139449121	139481609
RAB33B_chr4_139449121_139481609	0/0	t0032	3557	1	0	0	1	0	0	copy fasta	RAB33B	chr4	139449121	139481609
RAB33B_chr4_139449121_139481609	0/0	t0033	3559	1	1	0	0	0	0	copy fasta	RAB33B	chr4	139449121	139481609
RAB33B_chr4_139449121_139481609	0/0	t0034	3560	1	0	0	1	0	0	copy fasta	RAB33B	chr4	139449121	139481609
RAB33B_chr4_139449121_139481609	0/0	t0035	3560	1	1	0	0	0	0	copy fasta	RAB33B	chr4	139449121	139481609
RAB34_chr17_28709284_28722868	1/1	t0001	962	327	82	60	131	10	42	copy fasta	RAB34	chr17	28709284	28722868
RAB34_chr17_28709284_28722868	0/0	t0002	962	11	0	7	0	2	2	copy fasta	RAB34	chr17	28709284	28722868
RAB34_chr17_28709284_28722868	0/0	t0003	962	2	2	0	0	0	0	copy fasta	RAB34	chr17	28709284	28722868
RAB34_chr17_28709284_28722868	0/0	t0004	962	2	2	0	0	0	0	copy fasta	RAB34	chr17	28709284	28722868
RAB34_chr17_28709284_28722868	0/0	t0005	962	1	1	0	0	0	0	copy fasta	RAB34	chr17	28709284	28722868
RAB34_chr17_28709284_28722868	0/0	t0006	962	1	0	0	1	0	0	copy fasta	RAB34	chr17	28709284	28722868
RAB34_chr17_28709284_28722868	0/0	t0007	962	1	1	0	0	0	0	copy fasta	RAB34	chr17	28709284	28722868
RAB34_chr17_28709284_28722868	0/0	t0008	962	1	0	1	0	0	0	copy fasta	RAB34	chr17	28709284	28722868
RAB35_chr12_120090099_120121753	1/0	t0001	2250	178	17	51	78	11	20	copy fasta	RAB35	chr12	120090099	120121753
RAB35_chr12_120090099_120121753	0/0	t0002	2250	100	14	9	69	0	8	copy fasta	RAB35	chr12	120090099	120121753
RAB35_chr12_120090099_120121753	0/0	t0003	2250	46	28	9	4	1	4	copy fasta	RAB35	chr12	120090099	120121753
RAB35_chr12_120090099_120121753	0/0	t0004	2250	15	3	1	11	0	0	copy fasta	RAB35	chr12	120090099	120121753
RAB35_chr12_120090099_120121753	0/0	t0005	2250	9	9	0	0	0	0	copy fasta	RAB35	chr12	120090099	120121753
RAB35_chr12_120090099_120121753	0/0	t0006	2250	7	0	1	6	0	0	copy fasta	RAB35	chr12	120090099	120121753
RAB35_chr12_120090099_120121753	0/0	t0007	2250	6	0	4	0	0	2	copy fasta	RAB35	chr12	120090099	120121753
RAB35_chr12_120090099_120121753	0/0	t0008	2250	6	6	0	0	0	0	copy fasta	RAB35	chr12	120090099	120121753
RAB35_chr12_120090099_120121753	0/0	t0009	2250	5	0	0	5	0	0	copy fasta	RAB35	chr12	120090099	120121753
RAB35_chr12_120090099_120121753	0/0	t0010	2250	4	4	0	0	0	0	copy fasta	RAB35	chr12	120090099	120121753
RAB35_chr12_120090099_120121753	0/0	t0011	2251	3	0	0	3	0	0	copy fasta	RAB35	chr12	120090099	120121753
RAB35_chr12_120090099_120121753	0/0	t0012	2250	3	3	0	0	0	0	copy fasta	RAB35	chr12	120090099	120121753