JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAB35_chr12_120090099_120121753	0/0	t0013	2250	3	3	0	0	0	0	copy fasta	RAB35	chr12	120090099	120121753
RAB35_chr12_120090099_120121753	0/1	t0014	2250	2	0	1	0	0	0	copy fasta	RAB35	chr12	120090099	120121753
RAB35_chr12_120090099_120121753	0/0	t0015	2250	2	1	0	0	0	1	copy fasta	RAB35	chr12	120090099	120121753
RAB35_chr12_120090099_120121753	0/0	t0016	2250	2	0	1	0	0	1	copy fasta	RAB35	chr12	120090099	120121753
RAB35_chr12_120090099_120121753	0/0	t0017	2251	2	0	1	1	0	0	copy fasta	RAB35	chr12	120090099	120121753
RAB35_chr12_120090099_120121753	0/0	t0018	2250	2	2	0	0	0	0	copy fasta	RAB35	chr12	120090099	120121753
RAB35_chr12_120090099_120121753	0/0	t0019	2250	1	1	0	0	0	0	copy fasta	RAB35	chr12	120090099	120121753
RAB35_chr12_120090099_120121753	0/0	t0020	2250	1	1	0	0	0	0	copy fasta	RAB35	chr12	120090099	120121753
RAB35_chr12_120090099_120121753	0/0	t0021	2250	1	1	0	0	0	0	copy fasta	RAB35	chr12	120090099	120121753
RAB35_chr12_120090099_120121753	0/0	t0022	2251	1	1	0	0	0	0	copy fasta	RAB35	chr12	120090099	120121753
RAB35_chr12_120090099_120121753	0/0	t0023	2250	1	0	0	0	0	1	copy fasta	RAB35	chr12	120090099	120121753
RAB35_chr12_120090099_120121753	0/0	t0024	2250	1	0	1	0	0	0	copy fasta	RAB35	chr12	120090099	120121753
RAB35_chr12_120090099_120121753	0/0	t0025	2250	1	0	0	0	0	1	copy fasta	RAB35	chr12	120090099	120121753
RAB35_chr12_120090099_120121753	0/0	t0026	2250	1	0	0	1	0	0	copy fasta	RAB35	chr12	120090099	120121753
RAB35_chr12_120090099_120121753	0/0	t0027	2250	1	0	1	0	0	0	copy fasta	RAB35	chr12	120090099	120121753
RAB35_chr12_120090099_120121753	0/0	t0028	2250	1	0	0	1	0	0	copy fasta	RAB35	chr12	120090099	120121753
RAB35_chr12_120090099_120121753	0/0	t0029	2250	1	0	0	0	0	1	copy fasta	RAB35	chr12	120090099	120121753
RAB35_chr12_120090099_120121753	0/0	t0030	2250	1	0	0	0	0	1	copy fasta	RAB35	chr12	120090099	120121753
RAB35_chr12_120090099_120121753	0/0	t0031	2250	1	0	1	0	0	0	copy fasta	RAB35	chr12	120090099	120121753
RAB35_chr12_120090099_120121753	0/0	t0032	2250	1	1	0	0	0	0	copy fasta	RAB35	chr12	120090099	120121753
RAB35_chr12_120090099_120121753	0/0	t0033	2250	1	1	0	0	0	0	copy fasta	RAB35	chr12	120090099	120121753
RAB35_chr12_120090099_120121753	0/0	t0034	2250	1	0	0	1	0	0	copy fasta	RAB35	chr12	120090099	120121753
RAB35_chr12_120090099_120121753	0/0	t0035	2250	1	0	1	0	0	0	copy fasta	RAB35	chr12	120090099	120121753
RAB35_chr12_120090099_120121753	0/0	t0036	2250	1	1	0	0	0	0	copy fasta	RAB35	chr12	120090099	120121753
RAB35_chr12_120090099_120121753	0/0	t0037	2250	1	1	0	0	0	0	copy fasta	RAB35	chr12	120090099	120121753
RAB36_chr22_23140477_23170663	0/0	t0001	4188	105	11	14	71	0	9	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0002	4187	51	4	13	21	3	10	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0003	4188	49	5	19	12	4	9	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0004	4187	27	0	7	14	3	3	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0005	4187	16	9	1	2	1	3	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0006	4189	12	3	4	0	1	4	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0007	4188	11	11	0	0	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0008	4186	11	11	0	0	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0009	4187	9	0	8	0	1	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0010	4193	7	6	0	0	0	1	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0011	4187	7	0	0	7	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0012	4188	6	4	0	2	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/1	t0013	4193	6	0	4	0	0	1	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0014	4187	6	0	0	6	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0015	4188	5	0	0	5	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0016	4188	5	0	0	5	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0017	4185	4	3	1	0	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0018	4189	3	3	0	0	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0019	4187	3	0	0	3	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0020	4186	3	3	0	0	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0021	4188	2	0	0	2	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0022	4190	2	0	0	1	0	1	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0023	4188	2	2	0	0	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0024	4188	2	2	0	0	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0025	4187	2	0	0	2	0	0	copy fasta	RAB36	chr22	23140477	23170663