JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAB36_chr22_23140477_23170663	0/0	t0026	4186	2	2	0	0	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0027	4187	1	0	0	1	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0028	4188	1	0	0	0	0	1	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0029	4187	1	1	0	0	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0030	4188	1	1	0	0	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0031	4188	1	1	0	0	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0032	4188	1	1	0	0	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0033	4189	1	1	0	0	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0034	4189	1	0	0	1	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0035	4189	1	1	0	0	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0036	4188	1	0	0	1	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0037	4188	1	1	0	0	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0038	4168	1	1	0	0	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0039	4188	1	1	0	0	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0040	4189	1	1	0	0	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0041	4185	1	1	0	0	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0042	4188	1	0	0	0	0	1	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0043	4188	1	1	0	0	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0044	4188	1	1	0	0	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0045	4188	1	0	1	0	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0046	4188	1	0	0	1	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0047	4188	1	0	0	1	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0048	4186	1	1	0	0	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0049	4186	1	1	0	0	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0050	4193	1	0	1	0	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0051	4193	1	0	1	0	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0052	4187	1	0	1	0	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	1/0	t0053	4187	1	0	0	0	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0054	4187	1	1	0	0	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0055	4187	1	1	0	0	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0056	4187	1	0	0	1	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0057	4188	1	0	0	0	0	1	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0058	4187	1	0	0	1	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0059	4187	1	0	0	0	1	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0060	4187	1	0	0	1	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0061	4189	1	0	0	1	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0062	4188	1	0	0	1	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0063	4188	1	0	0	1	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0064	4193	1	0	1	0	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0065	4189	1	1	0	0	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	t0066	4186	1	1	0	0	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB37_chr17_74732256_74752335	0/0	t0001	1942	173	29	26	98	7	13	copy fasta	RAB37	chr17	74732256	74752335
RAB37_chr17_74732256_74752335	0/0	t0002	1942	68	28	16	11	4	9	copy fasta	RAB37	chr17	74732256	74752335
RAB37_chr17_74732256_74752335	0/0	t0003	1942	49	13	4	25	0	7	copy fasta	RAB37	chr17	74732256	74752335
RAB37_chr17_74732256_74752335	1/0	t0004	1942	33	7	10	11	2	2	copy fasta	RAB37	chr17	74732256	74752335
RAB37_chr17_74732256_74752335	0/0	t0005	1942	28	4	2	15	1	6	copy fasta	RAB37	chr17	74732256	74752335
RAB37_chr17_74732256_74752335	0/0	t0006	1942	17	1	15	1	0	0	copy fasta	RAB37	chr17	74732256	74752335
RAB37_chr17_74732256_74752335	0/0	t0007	1942	11	0	4	6	0	1	copy fasta	RAB37	chr17	74732256	74752335
RAB37_chr17_74732256_74752335	0/0	t0008	1942	7	1	0	5	0	1	copy fasta	RAB37	chr17	74732256	74752335
RAB37_chr17_74732256_74752335	0/0	t0009	1942	5	0	1	4	0	0	copy fasta	RAB37	chr17	74732256	74752335