JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAB37_chr17_74732256_74752335	0/0	t0010	1942	5	0	0	5	0	0	copy fasta	RAB37	chr17	74732256	74752335
RAB37_chr17_74732256_74752335	0/0	t0011	1941	3	3	0	0	0	0	copy fasta	RAB37	chr17	74732256	74752335
RAB37_chr17_74732256_74752335	0/0	t0012	1942	3	0	2	0	0	1	copy fasta	RAB37	chr17	74732256	74752335
RAB37_chr17_74732256_74752335	0/0	t0013	1941	3	0	0	3	0	0	copy fasta	RAB37	chr17	74732256	74752335
RAB37_chr17_74732256_74752335	0/0	t0014	1942	3	2	1	0	0	0	copy fasta	RAB37	chr17	74732256	74752335
RAB37_chr17_74732256_74752335	0/0	t0015	1942	2	0	0	1	1	0	copy fasta	RAB37	chr17	74732256	74752335
RAB37_chr17_74732256_74752335	0/0	t0016	1942	2	2	0	0	0	0	copy fasta	RAB37	chr17	74732256	74752335
RAB37_chr17_74732256_74752335	0/0	t0017	1942	2	2	0	0	0	0	copy fasta	RAB37	chr17	74732256	74752335
RAB37_chr17_74732256_74752335	0/0	t0018	1942	2	0	0	0	0	2	copy fasta	RAB37	chr17	74732256	74752335
RAB37_chr17_74732256_74752335	0/0	t0019	1942	1	1	0	0	0	0	copy fasta	RAB37	chr17	74732256	74752335
RAB37_chr17_74732256_74752335	0/1	t0020	1942	1	0	0	0	0	0	copy fasta	RAB37	chr17	74732256	74752335
RAB37_chr17_74732256_74752335	0/0	t0021	1942	1	0	0	0	0	1	copy fasta	RAB37	chr17	74732256	74752335
RAB37_chr17_74732256_74752335	0/0	t0022	1942	1	0	0	1	0	0	copy fasta	RAB37	chr17	74732256	74752335
RAB37_chr17_74732256_74752335	0/0	t0023	1941	1	0	1	0	0	0	copy fasta	RAB37	chr17	74732256	74752335
RAB37_chr17_74732256_74752335	0/0	t0024	1941	1	0	0	1	0	0	copy fasta	RAB37	chr17	74732256	74752335
RAB37_chr17_74732256_74752335	0/0	t0025	1941	1	0	0	1	0	0	copy fasta	RAB37	chr17	74732256	74752335
RAB37_chr17_74732256_74752335	0/0	t0026	1920	1	0	0	1	0	0	copy fasta	RAB37	chr17	74732256	74752335
RAB37_chr17_74732256_74752335	0/0	t0027	1942	1	1	0	0	0	0	copy fasta	RAB37	chr17	74732256	74752335
RAB37_chr17_74732256_74752335	0/0	t0028	1942	1	0	0	1	0	0	copy fasta	RAB37	chr17	74732256	74752335
RAB37_chr17_74732256_74752335	0/0	t0029	1942	1	0	0	1	0	0	copy fasta	RAB37	chr17	74732256	74752335
RAB37_chr17_74732256_74752335	0/0	t0030	1942	1	0	0	0	0	1	copy fasta	RAB37	chr17	74732256	74752335
RAB37_chr17_74732256_74752335	0/0	t0031	1942	1	0	0	0	1	0	copy fasta	RAB37	chr17	74732256	74752335
RAB37_chr17_74732256_74752335	0/0	t0032	1942	1	1	0	0	0	0	copy fasta	RAB37	chr17	74732256	74752335
RAB37_chr17_74732256_74752335	0/0	t0033	1941	1	1	0	0	0	0	copy fasta	RAB37	chr17	74732256	74752335
RAB37_chr17_74732256_74752335	0/0	t0034	1942	1	0	0	1	0	0	copy fasta	RAB37	chr17	74732256	74752335
RAB38_chr11_88108251_88180443	0/0	t0001	797	88	15	13	52	0	8	copy fasta	RAB38	chr11	88108251	88180443
RAB38_chr11_88108251_88180443	0/0	t0002	797	88	37	20	20	2	9	copy fasta	RAB38	chr11	88108251	88180443
RAB38_chr11_88108251_88180443	0/0	t0003	797	65	7	19	27	6	6	copy fasta	RAB38	chr11	88108251	88180443
RAB38_chr11_88108251_88180443	0/1	t0004	797	57	4	11	33	4	4	copy fasta	RAB38	chr11	88108251	88180443
RAB38_chr11_88108251_88180443	1/0	t0005	797	45	0	2	34	2	6	copy fasta	RAB38	chr11	88108251	88180443
RAB38_chr11_88108251_88180443	0/0	t0006	797	21	5	8	5	0	3	copy fasta	RAB38	chr11	88108251	88180443
RAB38_chr11_88108251_88180443	0/0	t0007	797	17	15	2	0	0	0	copy fasta	RAB38	chr11	88108251	88180443
RAB38_chr11_88108251_88180443	0/0	t0008	797	12	9	1	0	0	2	copy fasta	RAB38	chr11	88108251	88180443
RAB38_chr11_88108251_88180443	0/0	t0009	797	9	2	1	2	0	4	copy fasta	RAB38	chr11	88108251	88180443
RAB38_chr11_88108251_88180443	0/0	t0010	797	7	0	0	6	0	1	copy fasta	RAB38	chr11	88108251	88180443
RAB38_chr11_88108251_88180443	0/0	t0011	797	4	4	0	0	0	0	copy fasta	RAB38	chr11	88108251	88180443
RAB38_chr11_88108251_88180443	0/0	t0012	797	3	0	2	1	0	0	copy fasta	RAB38	chr11	88108251	88180443
RAB38_chr11_88108251_88180443	0/0	t0013	797	2	0	1	0	0	1	copy fasta	RAB38	chr11	88108251	88180443
RAB38_chr11_88108251_88180443	0/0	t0014	797	1	0	0	1	0	0	copy fasta	RAB38	chr11	88108251	88180443
RAB38_chr11_88108251_88180443	0/0	t0015	797	1	0	0	1	0	0	copy fasta	RAB38	chr11	88108251	88180443
RAB39A_chr11_107923448_107968482	0/1	t0001	1232	161	6	42	89	9	14	copy fasta	RAB39A	chr11	107923448	107968482
RAB39A_chr11_107923448_107968482	0/0	t0002	1231	97	6	13	51	8	19	copy fasta	RAB39A	chr11	107923448	107968482
RAB39A_chr11_107923448_107968482	1/0	t0003	1232	35	18	6	9	0	1	copy fasta	RAB39A	chr11	107923448	107968482
RAB39A_chr11_107923448_107968482	0/0	t0004	1232	33	29	4	0	0	0	copy fasta	RAB39A	chr11	107923448	107968482
RAB39A_chr11_107923448_107968482	0/0	t0005	1233	24	0	0	24	0	0	copy fasta	RAB39A	chr11	107923448	107968482
RAB39A_chr11_107923448_107968482	0/0	t0006	1231	20	16	2	0	0	2	copy fasta	RAB39A	chr11	107923448	107968482
RAB39A_chr11_107923448_107968482	0/0	t0007	1232	8	5	0	1	0	2	copy fasta	RAB39A	chr11	107923448	107968482
RAB39A_chr11_107923448_107968482	0/0	t0008	1232	5	0	0	4	0	1	copy fasta	RAB39A	chr11	107923448	107968482
RAB39A_chr11_107923448_107968482	0/0	t0009	1232	4	0	0	4	0	0	copy fasta	RAB39A	chr11	107923448	107968482
RAB39A_chr11_107923448_107968482	0/0	t0010	1232	4	0	1	0	0	3	copy fasta	RAB39A	chr11	107923448	107968482