JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAB39A_chr11_107923448_107968482	0/0	t0011	1232	3	0	0	3	0	0	copy fasta	RAB39A	chr11	107923448	107968482
RAB39A_chr11_107923448_107968482	0/0	t0012	1233	2	2	0	0	0	0	copy fasta	RAB39A	chr11	107923448	107968482
RAB39A_chr11_107923448_107968482	0/0	t0013	1231	2	2	0	0	0	0	copy fasta	RAB39A	chr11	107923448	107968482
RAB39A_chr11_107923448_107968482	0/0	t0014	1232	1	1	0	0	0	0	copy fasta	RAB39A	chr11	107923448	107968482
RAB39A_chr11_107923448_107968482	0/0	t0015	1232	1	0	0	1	0	0	copy fasta	RAB39A	chr11	107923448	107968482
RAB39A_chr11_107923448_107968482	0/0	t0016	1232	1	0	0	1	0	0	copy fasta	RAB39A	chr11	107923448	107968482
RAB39A_chr11_107923448_107968482	0/0	t0017	1232	1	0	0	0	0	1	copy fasta	RAB39A	chr11	107923448	107968482
RAB39A_chr11_107923448_107968482	0/0	t0018	1232	1	0	0	0	1	0	copy fasta	RAB39A	chr11	107923448	107968482
RAB39A_chr11_107923448_107968482	0/0	t0019	1232	1	0	0	0	0	1	copy fasta	RAB39A	chr11	107923448	107968482
RAB39A_chr11_107923448_107968482	0/0	t0020	1232	1	0	0	1	0	0	copy fasta	RAB39A	chr11	107923448	107968482
RAB39A_chr11_107923448_107968482	0/0	t0021	1232	1	1	0	0	0	0	copy fasta	RAB39A	chr11	107923448	107968482
RAB39B_chrX_155253235_155269491	0/1	t0001	2772	151	7	31	87	9	16	copy fasta	RAB39B	chrX	155253235	155269491
RAB39B_chrX_155253235_155269491	1/0	t0002	2772	94	35	18	26	4	10	copy fasta	RAB39B	chrX	155253235	155269491
RAB39B_chrX_155253235_155269491	0/0	t0003	2772	12	11	1	0	0	0	copy fasta	RAB39B	chrX	155253235	155269491
RAB39B_chrX_155253235_155269491	0/0	t0004	2772	7	6	1	0	0	0	copy fasta	RAB39B	chrX	155253235	155269491
RAB39B_chrX_155253235_155269491	0/0	t0005	2772	6	4	1	1	0	0	copy fasta	RAB39B	chrX	155253235	155269491
RAB39B_chrX_155253235_155269491	0/0	t0006	2772	4	0	0	4	0	0	copy fasta	RAB39B	chrX	155253235	155269491
RAB39B_chrX_155253235_155269491	0/0	t0007	2772	4	4	0	0	0	0	copy fasta	RAB39B	chrX	155253235	155269491
RAB39B_chrX_155253235_155269491	0/0	t0008	2772	2	2	0	0	0	0	copy fasta	RAB39B	chrX	155253235	155269491
RAB39B_chrX_155253235_155269491	0/0	t0009	2772	2	0	0	2	0	0	copy fasta	RAB39B	chrX	155253235	155269491
RAB39B_chrX_155253235_155269491	0/0	t0010	2773	1	0	0	1	0	0	copy fasta	RAB39B	chrX	155253235	155269491
RAB39B_chrX_155253235_155269491	0/0	t0011	2772	1	0	1	0	0	0	copy fasta	RAB39B	chrX	155253235	155269491
RAB39B_chrX_155253235_155269491	0/0	t0012	2771	1	0	0	1	0	0	copy fasta	RAB39B	chrX	155253235	155269491
RAB39B_chrX_155253235_155269491	0/0	t0013	2768	1	0	0	1	0	0	copy fasta	RAB39B	chrX	155253235	155269491
RAB39B_chrX_155253235_155269491	0/0	t0014	2772	1	1	0	0	0	0	copy fasta	RAB39B	chrX	155253235	155269491
RAB39B_chrX_155253235_155269491	0/0	t0015	2771	1	1	0	0	0	0	copy fasta	RAB39B	chrX	155253235	155269491
RAB39B_chrX_155253235_155269491	0/0	t0016	2772	1	0	1	0	0	0	copy fasta	RAB39B	chrX	155253235	155269491
RAB39B_chrX_155253235_155269491	0/0	t0017	2772	1	0	1	0	0	0	copy fasta	RAB39B	chrX	155253235	155269491
RAB39B_chrX_155253235_155269491	0/0	t0018	2772	1	1	0	0	0	0	copy fasta	RAB39B	chrX	155253235	155269491
RAB39B_chrX_155253235_155269491	0/0	t0019	2772	1	0	0	1	0	0	copy fasta	RAB39B	chrX	155253235	155269491
RAB3A_chr19_18191784_18209042	0/0	t0001	833	87	9	13	51	1	13	copy fasta	RAB3A	chr19	18191784	18209042
RAB3A_chr19_18191784_18209042	0/0	t0002	832	32	8	7	10	5	2	copy fasta	RAB3A	chr19	18191784	18209042
RAB3A_chr19_18191784_18209042	0/0	t0003	834	31	12	4	14	0	1	copy fasta	RAB3A	chr19	18191784	18209042
RAB3A_chr19_18191784_18209042	0/0	t0004	832	30	1	8	13	1	7	copy fasta	RAB3A	chr19	18191784	18209042
RAB3A_chr19_18191784_18209042	0/1	t0005	832	27	3	9	9	2	3	copy fasta	RAB3A	chr19	18191784	18209042
RAB3A_chr19_18191784_18209042	1/0	t0006	834	26	4	3	16	0	2	copy fasta	RAB3A	chr19	18191784	18209042
RAB3A_chr19_18191784_18209042	0/0	t0007	831	24	4	5	9	4	2	copy fasta	RAB3A	chr19	18191784	18209042
RAB3A_chr19_18191784_18209042	0/0	t0008	833	18	7	7	1	1	2	copy fasta	RAB3A	chr19	18191784	18209042
RAB3A_chr19_18191784_18209042	0/0	t0009	835	14	5	1	5	0	3	copy fasta	RAB3A	chr19	18191784	18209042
RAB3A_chr19_18191784_18209042	0/0	t0010	835	13	8	3	2	0	0	copy fasta	RAB3A	chr19	18191784	18209042
RAB3A_chr19_18191784_18209042	0/0	t0011	831	10	1	2	4	0	3	copy fasta	RAB3A	chr19	18191784	18209042
RAB3A_chr19_18191784_18209042	0/0	t0012	833	6	0	3	2	0	1	copy fasta	RAB3A	chr19	18191784	18209042
RAB3A_chr19_18191784_18209042	0/0	t0013	833	6	4	1	0	1	0	copy fasta	RAB3A	chr19	18191784	18209042
RAB3A_chr19_18191784_18209042	0/0	t0014	833	5	1	2	0	0	2	copy fasta	RAB3A	chr19	18191784	18209042
RAB3A_chr19_18191784_18209042	0/0	t0015	832	5	3	1	0	1	0	copy fasta	RAB3A	chr19	18191784	18209042
RAB3A_chr19_18191784_18209042	0/0	t0016	834	4	4	0	0	0	0	copy fasta	RAB3A	chr19	18191784	18209042
RAB3A_chr19_18191784_18209042	0/0	t0017	830	4	0	3	0	0	1	copy fasta	RAB3A	chr19	18191784	18209042
RAB3A_chr19_18191784_18209042	0/0	t0018	832	3	3	0	0	0	0	copy fasta	RAB3A	chr19	18191784	18209042
RAB3A_chr19_18191784_18209042	0/0	t0019	833	2	2	0	0	0	0	copy fasta	RAB3A	chr19	18191784	18209042
RAB3A_chr19_18191784_18209042	0/0	t0020	835	2	0	0	0	0	2	copy fasta	RAB3A	chr19	18191784	18209042