Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ACER3_chr11_76855918_77031797	0/0	t0017	6519	4	3	1	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0018	6518	4	0	1	3	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0019	6529	4	0	0	3	0	1	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0020	6532	4	4	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0021	6524	4	4	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0022	6530	3	0	1	2	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0023	6517	3	0	1	1	0	1	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0024	6530	3	0	0	3	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0025	6531	3	3	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0026	6508	3	3	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0027	6503	3	3	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0028	6517	2	0	0	2	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0029	6523	2	2	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0030	6530	2	0	1	0	1	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0031	6529	2	0	0	0	1	1	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0032	6540	2	0	2	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0033	6530	2	0	0	2	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0034	6531	2	0	0	2	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0035	6530	2	0	0	0	0	2	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0036	6528	2	0	0	2	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0037	6515	2	2	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0038	6519	2	0	0	2	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0039	6532	2	0	1	0	0	1	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0040	6532	2	0	0	2	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0041	6531	2	0	0	2	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0042	6530	2	2	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0043	6529	2	0	0	1	0	1	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0044	6530	2	2	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0045	6526	2	2	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0046	6514	2	2	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0047	6517	1	1	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0048	6521	1	0	1	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0049	6517	1	0	0	1	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0050	6520	1	0	1	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0051	6518	1	0	0	1	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0052	6517	1	0	0	1	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0053	6515	1	0	0	1	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0054	6514	1	0	0	0	1	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0055	6515	1	0	0	1	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0056	6517	1	0	0	1	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0057	6521	1	0	0	1	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0058	6518	1	0	1	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0059	6516	1	0	0	1	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0060	6515	1	0	0	1	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0061	6518	1	0	0	1	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0062	6532	1	0	0	1	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0063	6515	1	0	0	1	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0064	6525	1	0	1	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0065	6531	1	0	0	1	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0066	6530	1	0	0	1	0	0	copy fasta	ACER3	chr11	76855918	77031797