JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
RAB3A_chr19_18191784_18209042	0/0	t0021	836	2	2	0	0	0	copy fasta	RAB3A	chr19	18191784	18209042
RAB3A_chr19_18191784_18209042	0/0	t0022	833	2	2	0	0	0	copy fasta	RAB3A	chr19	18191784	18209042
RAB3A_chr19_18191784_18209042	0/0	t0023	832	1	1	0	0	0	copy fasta	RAB3A	chr19	18191784	18209042
RAB3A_chr19_18191784_18209042	0/0	t0024	832	1	0	0	1	0	copy fasta	RAB3A	chr19	18191784	18209042
RAB3A_chr19_18191784_18209042	0/0	t0025	834	1	0	0	0	1	copy fasta	RAB3A	chr19	18191784	18209042
RAB3A_chr19_18191784_18209042	0/0	t0026	835	1	0	0	1	0	copy fasta	RAB3A	chr19	18191784	18209042
RAB3A_chr19_18191784_18209042	0/0	t0027	834	1	0	0	0	1	copy fasta	RAB3A	chr19	18191784	18209042
RAB3A_chr19_18191784_18209042	0/0	t0028	833	1	1	0	0	0	copy fasta	RAB3A	chr19	18191784	18209042
RAB3A_chr19_18191784_18209042	0/0	t0029	835	1	1	0	0	0	copy fasta	RAB3A	chr19	18191784	18209042
RAB3A_chr19_18191784_18209042	0/0	t0030	832	1	1	0	0	0	copy fasta	RAB3A	chr19	18191784	18209042
RAB3A_chr19_18191784_18209042	0/0	t0031	831	1	1	0	0	0	copy fasta	RAB3A	chr19	18191784	18209042
RAB3A_chr19_18191784_18209042	0/0	t0032	832	1	1	0	0	0	copy fasta	RAB3A	chr19	18191784	18209042
RAB3A_chr19_18191784_18209042	0/0	t0033	831	1	0	0	1	0	copy fasta	RAB3A	chr19	18191784	18209042
RAB3A_chr19_18191784_18209042	0/0	t0034	833	1	0	0	1	0	copy fasta	RAB3A	chr19	18191784	18209042
RAB3A_chr19_18191784_18209042	0/0	t0035	833	1	0	0	1	0	copy fasta	RAB3A	chr19	18191784	18209042
RAB3A_chr19_18191784_18209042	0/0	t0036	833	1	1	0	0	0	copy fasta	RAB3A	chr19	18191784	18209042
RAB3A_chr19_18191784_18209042	0/0	t0037	833	1	1	0	0	0	copy fasta	RAB3A	chr19	18191784	18209042
RAB3A_chr19_18191784_18209042	0/0	t0038	832	1	1	0	0	0	copy fasta	RAB3A	chr19	18191784	18209042
RAB3A_chr19_18191784_18209042	0/0	t0039	831	1	0	0	1	0	copy fasta	RAB3A	chr19	18191784	18209042
RAB3B_chr1_51902956_51995700	0/0	t0001	12121	4	4	0	0	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0002	12091	3	1	1	0	1	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0003	12118	2	2	0	0	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0004	12092	2	0	1	1	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0005	12093	2	0	1	0	1	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0006	12092	1	1	0	0	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0007	12093	1	1	0	0	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0008	12109	1	1	0	0	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0009	12092	1	1	0	0	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0010	12108	1	1	0	0	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0011	12092	1	0	0	1	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0012	12111	1	0	1	0	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0013	12121	1	1	0	0	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	1/0	t0014	12121	1	0	0	0	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0015	12121	1	1	0	0	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0016	12103	1	0	1	0	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0017	12117	1	1	0	0	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0018	12122	1	0	0	0	1	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0019	12122	1	1	0	0	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0020	12115	1	1	0	0	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0021	12115	1	1	0	0	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0022	12123	1	1	0	0	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0023	12114	1	0	0	1	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0024	12113	1	1	0	0	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0025	12121	1	1	0	0	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/1	t0026	12121	1	0	0	0	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0027	12121	1	1	0	0	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0028	12116	1	1	0	0	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0029	12114	1	1	0	0	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0030	12114	1	1	0	0	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0031	12121	1	0	1	0	0	copy fasta	RAB3B	chr1	51902956	51995700